PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SMil_00029097-RA_Salv
Organism
Salvia miltiorrhiza
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Mentheae; Salvia
Family CO-like
Protein Properties Length: 403aa    MW: 44222.4 Da    PI: 5.7792
Description CO-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SMil_00029097-RA_SalvgenomeNDCTCMView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-B_box16.61.7e-05544639
               zf-B_box  6 CpeHeekelqlfCedCqqllCedClleeHkg......Htv 39
                           C+ ++e++ + fC+++   lC +C  + H+       H++
  SMil_00029097-RA_Salv  5 CDFCGEQRSIVFCRSDAASLCLSCDCTVHSAnalsrrHSR 44
                           *************************999955667777765 PP
2zf-B_box21.35.4e-074690442
               zf-B_box  4 rkCpeHeekelqlfCedCqqllCedClleeHkg......Htvvpl 42
                            +C++++++++   C + +  lC++C   +H +      H+++p+
  SMil_00029097-RA_Salv 46 LVCERCNSQPAFVRCIEEKASLCQNCDWMGHVNsnvspaHKRQPV 90
                           68*****************************77789999998875 PP
3CCT62.11.8e-21346389144
                    CCT   1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkqa 44 
                            R +a++RYkeK+k+R FeKk+rYesRKa+A+ R RvKGrFvk+ 
  SMil_00029097-RA_Salv 346 RTNAVMRYKEKKKSRMFEKKVRYESRKARADVRRRVKGRFVKAG 389
                            899**************************************985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS501199.499147IPR000315B-box-type zinc finger
CDDcd000211.29E-6447No hitNo description
SMARTSM003362.2E-5447IPR000315B-box-type zinc finger
PROSITE profilePS501199.3854390IPR000315B-box-type zinc finger
CDDcd000213.80E-54790No hitNo description
SMARTSM003360.864890IPR000315B-box-type zinc finger
PfamPF062035.8E-17346388IPR010402CCT domain
PROSITE profilePS5101715.17346388IPR010402CCT domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005622Cellular Componentintracellular
GO:0005886Cellular Componentplasma membrane
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 403 aa     Download sequence    Send to blast
MGYLCDFCGE QRSIVFCRSD AASLCLSCDC TVHSANALSR RHSRTLVCER CNSQPAFVRC  60
IEEKASLCQN CDWMGHVNSN VSPAHKRQPV NSYSDCPSAS ELSAVWPFLF NSSPVRDAAC  120
EQEMGSMSIT DKRTIDRQDP QEKANIQNES LRVEASSQLN MDLDKSAGWM ESLTPLDQPT  180
ASTSSSMLKA PLSAAKGRAL YEDDGCYDNL NMDEIDLGFD NYDELFGMAL DNPKNIFGND  240
GIFGMKDMST SNCQGASAAE VSSTGGLNPT RPACSNVASA DSVISSKTEP NLCFTKQAHS  300
GLSFSGLTGE TTGADYQDCG VSSMAIVRDP PWYPPGPESS IPSTSRTNAV MRYKEKKKSR  360
MFEKKVRYES RKARADVRRR VKGRFVKAGE TYDYDPLSPS KSY
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011100551.10.0zinc finger protein CONSTANS-LIKE 9
RefseqXP_011100552.10.0zinc finger protein CONSTANS-LIKE 9
RefseqXP_011100553.10.0zinc finger protein CONSTANS-LIKE 9
SwissprotQ9LUA91e-127COL10_ARATH; Zinc finger protein CONSTANS-LIKE 10
TrEMBLA0A4D8ZM890.0A0A4D8ZM89_SALSN; Uncharacterized protein
STRINGMigut.M00064.1.p1e-172(Erythranthe guttata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA12702468
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G48250.11e-108B-box type zinc finger protein with CCT domain
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]