PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SMil_00029058-RA_Salv
Organism
Salvia miltiorrhiza
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Mentheae; Salvia
Family MYB_related
Protein Properties Length: 189aa    MW: 21473.8 Da    PI: 4.9523
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SMil_00029058-RA_SalvgenomeNDCTCMView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding49.21.2e-155095148
                           TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
        Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                           rg+++ eE+ ++++++++lG++ W+ Ia++++ gRt++++k+ w+++l
  SMil_00029058-RA_Salv 50 RGNFSREEEAIIINLHQELGNR-WSVIASRLP-GRTDNEIKNIWHTHL 95
                           89********************.*********.***********9986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466899.61E-2331103IPR009057Homeodomain-like
PROSITE profilePS500904.1473144IPR017877Myb-like domain
Gene3DG3DSA:1.10.10.607.9E-123155IPR009057Homeodomain-like
PROSITE profilePS5129424.5794599IPR017930Myb domain
SMARTSM007171.7E-144997IPR001005SANT/Myb domain
PfamPF002493.0E-145095IPR001005SANT/Myb domain
CDDcd001674.39E-115295No hitNo description
Gene3DG3DSA:1.10.10.604.0E-225699IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 189 aa     Download sequence    Send to blast
LQKKISSSSI SSTTTAMATG GPFPNGPGFL RCGKSCRLRW MNYLRPDIKR GNFSREEEAI  60
IINLHQELGN RWSVIASRLP GRTDNEIKNI WHTHLKKRLC KRSRAEPEAR NESTSDEDAT  120
NSPMHSFSEV SSENPPEMDD SFWSEVLSGD DFVTDSPLRL SESVNEDGGM DFWYNLFNRA  180
DDILDLPDF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A5e-19319940108B-MYB
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator that regulates freezing tolerance by affecting expression of CBF genes. {ECO:0000269|PubMed:24415840}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by salicylic acid (SA), jasmonic acid (JA), salt (NaCl), ethylene and auxin (IAA) (PubMed:16463103). Down-regulated by cold treatment (PubMed:24415840). {ECO:0000269|PubMed:16463103, ECO:0000269|PubMed:24415840}.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKF0593760.0KF059376.1 Salvia miltiorrhiza MYB-related transcription factor (MYB22) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011080041.13e-56transcription factor MYB14
RefseqXP_022872992.18e-56transcription factor MYB14-like
SwissprotQ9SJX82e-45MYB14_ARATH; Transcription factor MYB14
TrEMBLW8CJZ81e-115W8CJZ8_SALMI; MYB transcription factor
STRINGXP_004296369.11e-52(Fragaria vesca)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA1737334
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G31180.11e-47myb domain protein 14
Publications ? help Back to Top
  1. Chen Y, et al.
    AtMYB14 Regulates Cold Tolerance in Arabidopsis.
    Plant Mol. Biol. Rep., 2013. 31: p. 87-97
    [PMID:24415840]