PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SMil_00028937-RA_Salv
Organism
Salvia miltiorrhiza
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Mentheae; Salvia
Family ERF
Protein Properties Length: 309aa    MW: 33304.3 Da    PI: 4.4743
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SMil_00028937-RA_SalvgenomeNDCTCMView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP262.21.1e-19103151254
                    AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkle 54 
                            +y+GVr++k +g+W+AeIrdp++   +kr++lg++ taeeA +a++  r+++e
  SMil_00028937-RA_Salv 103 KYRGVRQRK-WGKWAAEIRDPVK---QKRVWLGTYNTAEEASQAYELKRLEFE 151
                            8*******9.**********654...5**********************9987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.730.106.0E-22103149IPR001471AP2/ERF domain
PROSITE profilePS5103220.178103160IPR001471AP2/ERF domain
CDDcd000189.67E-22103143No hitNo description
SuperFamilySSF541716.15E-17103150IPR016177DNA-binding domain
PfamPF008473.9E-13103152IPR001471AP2/ERF domain
SMARTSM003809.7E-18103157IPR001471AP2/ERF domain
PRINTSPR003672.3E-10104115IPR001471AP2/ERF domain
PRINTSPR003672.3E-10126142IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 309 aa     Download sequence    Send to blast
MAEPRKSISS NRETLIRKPR IKPPSTKPMR RVRIVCSDPY ATDSSDDEAA AKRVKRIVRE  60
VCFPIGAAAP KTPDSESCSI QESSSGGGER KTRSNSLSSA SGKYRGVRQR KWGKWAAEIR  120
DPVKQKRVWL GTYNTAEEAS QAYELKRLEF EALAGNADGK TVYSMVVTER PAPLVSVSAS  180
EDSSTGSVVS HTSPPSVDSS NSTDLAVEAA VKFEDVVLDD ELAALARIGE EIELEFELDS  240
LMMVDDDDIV FGLDDLPICG FDSADRGGAL PDFDFDFNCA EAVSWMDEAA TVPLMGGAAA  300
AAPLNIACP
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A1e-1296144756Ethylene-responsive transcription factor ERF096
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00217DAPTransfer from AT1G68550Download
Motif logo
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011070810.11e-104ethylene-responsive transcription factor ERF118-like
TrEMBLA0A4D9BPQ71e-146A0A4D9BPQ7_SALSN; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA29572351
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68550.25e-32ERF family protein