PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

SMil_00028851-RA_Salv

Common Name

MYB9

Organism

Salvia miltiorrhiza

Taxonomic ID

226208

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Mentheae; Salvia

Family

MYB

Protein Properties

Length: 261aa MW: 29835 Da PI: 6.3974

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
SMil_00028851-RA_Salv	genome	NDCTCM	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	55.1	1.8e-17	23	70	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg+WT +Ed l+++++ +G g+W++ ar g++Rt+k+c++rw++yl SMil_00028851-RA_Salv 23 RGPWTVDEDFTLINYIAHHGEGRWNSLARSAGLKRTGKSCRLRWLNYL 70 89********************************************97 PP
2	Myb_DNA-binding	51.7	2e-16	76	119	1	46
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 rg+ T eE++l+++++ ++G++ W++Ia++++ gRt++++k++w++ SMil_00028851-RA_Salv 76 RGNITLEEQLLILELHSRWGNR-WSKIAQHLP-GRTDNEIKNYWRT 119 7999****************.*****.*********96 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	15.069	18	70	IPR017930	Myb domain
SuperFamily	SSF46689	2.16E-30	21	117	IPR009057	Homeodomain-like
SMART	SM00717	3.5E-14	22	72	IPR001005	SANT/Myb domain
Pfam	PF00249	5.0E-16	23	70	IPR001005	SANT/Myb domain
Gene3D	G3DSA:1.10.10.60	1.2E-21	24	77	IPR009057	Homeodomain-like
CDD	cd00167	1.02E-10	25	70	No hit	No description
PROSITE profile	PS51294	23.246	71	125	IPR017930	Myb domain
SMART	SM00717	1.3E-14	75	123	IPR001005	SANT/Myb domain
Pfam	PF00249	4.0E-15	76	119	IPR001005	SANT/Myb domain
Gene3D	G3DSA:1.10.10.60	5.8E-23	78	124	IPR009057	Homeodomain-like
CDD	cd00167	3.48E-7	96	119	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0009651	Biological Process	response to salt stress
GO:0009737	Biological Process	response to abscisic acid
GO:0009751	Biological Process	response to salicylic acid
GO:0046686	Biological Process	response to cadmium ion
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 261 aa Download sequence Send to blast
MDHHQDDTKS YSQSEEDLLE LRRGPWTVDE DFTLINYIAH HGEGRWNSLA RSAGLKRTGK 60 SCRLRWLNYL RPDVRRGNIT LEEQLLILEL HSRWGNRWSK IAQHLPGRTD NEIKNYWRTR 120 VQKHAKQLKC DVNSKQFKDT MRYLWMPRLV ERIQAAAAAA PNLDVAVALP RPENSSAAAS 180 SESFGTPASD LTDCYNNQDC YAANNNQFSY GDQLSLSSPS GYFNQGLDFG GQWAMDGGDA 240 SDSLWSVDDV WFLQQQFNTN A

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1h8a_C	2e-25	20	123	24	126	MYB TRANSFORMING PROTEIN
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor involved in abiotic stress responses. Plays a regulatory role in tolerance to salt, cold, and drought stresses. Regulates positively the expression of genes involved in proline synthesis and transport, and genes involved in reactive oxygen species (ROS) scavenging such as peroxidase, superoxide dismutase and catalase during salt stress. Transactivates stress-related genes, including LEA3, RAB16A and DREB2A during salt stress. {ECO:0000269\|PubMed:22301384}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Induced by salt, cold and osmotic stresses, and abscisic acid (ABA). Down-regulated by salicylic acid (SA). {ECO:0000269\|PubMed:22301384}.

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	KF059363	0.0	KF059363.1 Salvia miltiorrhiza MYB-related transcription factor (MYB9) mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_028115735.1	1e-123	transcription factor MYB108-like
Swissprot	Q10MB4	3e-90	MYB2_ORYSJ; Transcription factor MYB2
TrEMBL	A0A059PRD9	0.0	A0A059PRD9_SALMI; MYB-related transcription factor
STRING	XP_009612140.1	1e-118	(Nicotiana tomentosiformis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA1397	23	75

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G49620.1	1e-82	myb domain protein 78

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764] Yang A,Dai X,Zhang WH A R2R3-type MYB gene, OsMYB2, is involved in salt, cold, and dehydration tolerance in rice. J. Exp. Bot., 2012. 63(7): p. 2541-56 [PMID:22301384] Chen X, et al. The NAC family transcription factor OsNAP confers abiotic stress response through the ABA pathway. Plant Cell Physiol., 2014. 55(3): p. 604-19 [PMID:24399239] Li C,Lu S Genome-wide characterization and comparative analysis of R2R3-MYB transcription factors shows the complexity of MYB-associated regulatory networks in Salvia miltiorrhiza. BMC Genomics, 2014. 15: p. 277 [PMID:24725266] Lv Y, et al. New insights into the genetic basis of natural chilling and cold shock tolerance in rice by genome-wide association analysis. Plant Cell Environ., 2016. 39(3): p. 556-70 [PMID:26381647] Hong Y,Zhang H,Huang L,Li D,Song F Overexpression of a Stress-Responsive NAC Transcription Factor Gene ONAC022 Improves Drought and Salt Tolerance in Rice. Front Plant Sci, 2016. 7: p. 4 [PMID:26834774]