PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

SMil_00028814-RA_Salv

Organism

Salvia miltiorrhiza

Taxonomic ID

226208

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Mentheae; Salvia

Family

NAC

Protein Properties

Length: 297aa MW: 33688.9 Da PI: 8.3421

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
SMil_00028814-RA_Salv	genome	NDCTCM	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	170.3	6.3e-53	15	142	1	128
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgk 88 + pGfrFhPtdeelv +yLk+k+++++l++ e ik+vdiyk++PwdLpk ++++ekewyf+++rd+ky++++r+nr+t sg+Wkatg+ SMil_00028814-RA_Salv 15 MLPGFRFHPTDEELVEFYLKRKLQHRTLPI-ELIKQVDIYKYDPWDLPKLASTGEKEWYFYCPRDRKYRNSTRPNRVTGSGFWKATGT 101 579*************************.89***********9888999***************************** PP NAM 89 dkevlsk.kgelvglkktLvfykgrapkgektdWvmheyrl 128 d++++s+ + + +glkk+Lvfy+gra kg ktdW+mhe+rl SMil_00028814-RA_Salv 102 DRPIYSSgGPKCIGLKKSLVFYRGRAAKGIKTDWMMHEFRL 142 **955566*************************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51005	57.424	15	171	IPR003441	NAC domain
SuperFamily	SSF101941	6.8E-60	15	171	IPR003441	NAC domain
Pfam	PF02365	9.5E-26	17	142	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 297 aa Download sequence Send to blast
MDAKNESDRC VDDIMLPGFR FHPTDEELVE FYLKRKLQHR TLPIELIKQV DIYKYDPWDL 60 PKLASTGEKE WYFYCPRDRK YRNSTRPNRV TGSGFWKATG TDRPIYSSGG PKCIGLKKSL 120 VFYRGRAAKG IKTDWMMHEF RLPSSTTAAA GPPPKTLPPT DSWAICRIFK KANSTANRGL 180 SHTWAASLAE TTSPDAFTYT NFTSDNNVND PINFSGNLVF SDNRGTADLT SMFFNQPAAD 240 HQFSGVEEEE GGLRKNVWEN IRSMGFPFSL PPNLPWESPP CPSEMSSTTY STNKCYI

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
3ulx_A	2e-57	1	174	1	171	Stress-induced transcription factor NAC1
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Promotes periclinal root capforming cell divisions. Activates expression of its negative regulator SMB in a feedback loop for controlled switches in cell division plane. {ECO:0000269\|PubMed:19081078}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Repressed by SMB in oriented-divised root cap stem cells. {ECO:0000269\|PubMed:19081078}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011098618.1	1e-146	putative NAC domain-containing protein 94
Swissprot	Q9ZVH0	6e-98	FEZ_ARATH; Protein FEZ
TrEMBL	A0A2G9I411	1e-138	A0A2G9I411_9LAMI; Uncharacterized protein
STRING	Migut.H00918.1.p	1e-129	(Erythranthe guttata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA2202	22	62

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G26870.1	1e-96	NAC family protein

Publications ? help Back to Top
Bennett T,van den Toorn A,Willemsen V,Scheres B Precise control of plant stem cell activity through parallel regulatory inputs. Development, 2014. 141(21): p. 4055-64 [PMID:25256342]