PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SMil_00028767-RA_Salv
Organism
Salvia miltiorrhiza
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Mentheae; Salvia
Family MYB_related
Protein Properties Length: 307aa    MW: 34951.7 Da    PI: 10.7406
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SMil_00028767-RA_SalvgenomeNDCTCMView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding37.65.2e-12555146
                           TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT.....TTS-HHHHHHHHHH CS
        Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmg.....kgRtlkqcksrwqk 46
                           +++WT eE++ l+ +v+++G g Wk I           +R+  ++k++w++
  SMil_00028767-RA_Salv  5 KLKWTSEEEQALKAGVAKYGAGKWKNILVDSEfkhklANRSNVDLKDKWRN 55
                           689**********************************9************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129414.816161IPR017930Myb domain
SuperFamilySSF466891.94E-14357IPR009057Homeodomain-like
SMARTSM007173.5E-7459IPR001005SANT/Myb domain
PfamPF002491.6E-8555IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.604.5E-13556IPR009057Homeodomain-like
CDDcd116601.35E-18756No hitNo description
SMARTSM005261.4E-16107171IPR005818Linker histone H1/H5, domain H15
CDDcd000738.95E-11107197No hitNo description
PROSITE profilePS5150424.866108176IPR005818Linker histone H1/H5, domain H15
Gene3DG3DSA:1.10.10.106.2E-14109176IPR011991Winged helix-turn-helix DNA-binding domain
SuperFamilySSF467851.59E-14109179IPR011991Winged helix-turn-helix DNA-binding domain
PfamPF005382.6E-12111169IPR005818Linker histone H1/H5, domain H15
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006334Biological Processnucleosome assembly
GO:0000786Cellular Componentnucleosome
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 307 aa     Download sequence    Send to blast
MGNQKLKWTS EEEQALKAGV AKYGAGKWKN ILVDSEFKHK LANRSNVDLK DKWRNMGGQG  60
SGANAMTPRA KSITNSALTP KAQSSALILV PIENVNDKPP QSPEGVKNSH KYNEMILEAL  120
SSIKDRNGSD FVSILRFIEK KYEVPQNFRR LLSSKLRKLV LQGTVEKVQK HYKIKHASLG  180
IKTPLPKQKV VRSKPRRDTR PRISIEMENA AKIAAHKIAE AENKAFLAAE AVKESERLLQ  240
MAEEADAVVL HLKQIFEQRK EGQRRRHKLQ KILFIMLYHL LRRCAPVVLL VMEPSSVRHD  300
WPELLYS
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011072548.11e-108telomere repeat-binding factor 4 isoform X1
TrEMBLA0A4D9BEK21e-152A0A4D9BEK2_SALSN; Myb proto-oncogene protein, plant
STRINGXP_009616026.12e-92(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA25042355
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G17520.13e-48MYB_related family protein