PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | SMil_00028713-RA_Salv | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Mentheae; Salvia
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Family | LBD | ||||||||
Protein Properties | Length: 146aa MW: 16242.5 Da PI: 7.3687 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 144.8 | 2.6e-45 | 6 | 105 | 1 | 100 |
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqle 88 +Ca+Ck+lrr+CakdC++apyfp+++p+kfa+vhk+FGasnv+k+l++lpe++r da++slvyeA+ar rdPvyG+vg+i+ lq+q++ SMil_00028713-RA_Salv 6 PCASCKLLRRRCAKDCIFAPYFPSDDPHKFAIVHKVFGASNVSKMLQELPEQQRGDAVNSLVYEANARGRDPVYGCVGTISYLQNQVS 93 7*************************************************************************************** PP DUF260 89 qlkaelallkee 100 ql+ +la++++e SMil_00028713-RA_Salv 94 QLQMQLAVAQAE 105 ********9987 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50891 | 27.494 | 5 | 106 | IPR004883 | Lateral organ boundaries, LOB |
Pfam | PF03195 | 1.3E-44 | 6 | 103 | IPR004883 | Lateral organ boundaries, LOB |
Sequence ? help Back to Top |
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Protein Sequence Length: 146 aa Download sequence Send to blast |
MGGSSPCASC KLLRRRCAKD CIFAPYFPSD DPHKFAIVHK VFGASNVSKM LQELPEQQRG 60 DAVNSLVYEA NARGRDPVYG CVGTISYLQN QVSQLQMQLA VAQAEILCIQ MHQDKSYFLQ 120 NDLLNIPIPN ANSFNKESLY GHDMVS |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5ly0_A | 3e-46 | 2 | 107 | 7 | 112 | LOB family transfactor Ramosa2.1 |
5ly0_B | 3e-46 | 2 | 107 | 7 | 112 | LOB family transfactor Ramosa2.1 |
Search in ModeBase |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_021820147.1 | 8e-79 | LOB domain-containing protein 12-like | ||||
Swissprot | Q8LBW3 | 1e-70 | LBD12_ARATH; LOB domain-containing protein 12 | ||||
TrEMBL | A0A314UGH6 | 2e-77 | A0A314UGH6_PRUYE; LOB domain-containing protein 12-like | ||||
STRING | XP_008233810.1 | 1e-77 | (Prunus mume) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA43 | 24 | 669 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G30130.1 | 4e-73 | LBD family protein |
Publications ? help Back to Top | |||
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