PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SMil_00028606-RA_Salv
Organism
Salvia miltiorrhiza
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Mentheae; Salvia
Family ERF
Protein Properties Length: 150aa    MW: 16408.4 Da    PI: 10.2308
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SMil_00028606-RA_SalvgenomeNDCTCMView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP252.89.7e-173281255
                    AP2  2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                            y+G+r +k +g+WvAeIr+p   +kr r++lg++ ++  Aa+a++ a   l+g
  SMil_00028606-RA_Salv 32 PYRGIRMRK-WGKWVAEIREP---NKRSRIWLGSYSSPVAAARAYDTAVFHLRG 81
                           69*****99.**********9...336**********************99998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5103221.9973289IPR001471AP2/ERF domain
SuperFamilySSF541719.81E-213289IPR016177DNA-binding domain
SMARTSM003809.4E-363295IPR001471AP2/ERF domain
CDDcd000181.74E-253390No hitNo description
PRINTSPR003671.3E-113344IPR001471AP2/ERF domain
PfamPF008476.1E-103381IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.109.0E-303390IPR001471AP2/ERF domain
PRINTSPR003671.3E-117191IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 150 aa     Download sequence    Send to blast
MESVCCATSS TSSSSSENPN KRKQRQRAAD KPYRGIRMRK WGKWVAEIRE PNKRSRIWLG  60
SYSSPVAAAR AYDTAVFHLR GPTARLNFPE CVPEYGTAAA DLPAAAIRKK ATEVGARVDA  120
LQAAGAIKSG RAPQKPDLNE YPSPESSEEN
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A2e-152892166ATERF1
3gcc_A2e-152892166ATERF1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011074400.11e-71ethylene-responsive transcription factor ERF008-like
SwissprotQ9FH945e-49ERF10_ARATH; Ethylene-responsive transcription factor ERF010
TrEMBLA0A2G9FZ017e-76A0A2G9FZ01_9LAMI; Uncharacterized protein
STRINGMigut.C00546.1.p7e-67(Erythranthe guttata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA9432390
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G67190.19e-51DREB and EAR motif protein 2
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]