PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | SMil_00028594-RA_Salv | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Mentheae; Salvia
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Family | C2H2 | ||||||||
Protein Properties | Length: 196aa MW: 21415.1 Da PI: 8.0144 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 11.8 | 0.00077 | 56 | 78 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C+ C + F ++ L H++ H SMil_00028594-RA_Salv 56 FPCNFCQRKFYSSQALGGHQNAH 78 89******************988 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF57667 | 2.55E-6 | 54 | 83 | No hit | No description |
PROSITE profile | PS50157 | 11.094 | 56 | 83 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 58 | 78 | IPR007087 | Zinc finger, C2H2 |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0044212 | Molecular Function | transcription regulatory region DNA binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 196 aa Download sequence Send to blast |
MSNQDSSKGS CSLIELSSNS ISLDLSLTFK ASQDAGADSV ASSTSESTPT APPRAFPCNF 60 CQRKFYSSQA LGGHQNAHKR ERSLAKRAIR MGVFSDRYAS LASLPLHGSP FKCLGIKSHA 120 SLHHPLVPPV RPPEHSRITP KFRDAYLFQP IYMEEEEDTH LLWPGSFSAD ASSPVTFLDK 180 TAAFTSESTP DLTLRL |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Acts as negative regulator of abscisic acid (ABA) signaling during germination and early seedling development. {ECO:0000269|PubMed:24808098}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_011099925.1 | 1e-72 | zinc finger protein 4-like isoform X2 | ||||
Refseq | XP_020554558.1 | 2e-72 | zinc finger protein 4-like isoform X1 | ||||
Refseq | XP_020554559.1 | 1e-72 | zinc finger protein 4-like isoform X2 | ||||
Refseq | XP_020554560.1 | 1e-72 | zinc finger protein 4-like isoform X2 | ||||
Refseq | XP_020554561.1 | 1e-72 | zinc finger protein 4-like isoform X2 | ||||
Refseq | XP_020554562.1 | 1e-72 | zinc finger protein 4-like isoform X2 | ||||
Swissprot | Q39263 | 4e-35 | ZFP4_ARATH; Zinc finger protein 4 | ||||
TrEMBL | A0A4D9A2K4 | 5e-91 | A0A4D9A2K4_SALSN; Uncharacterized protein | ||||
STRING | POPTR_0017s02490.1 | 2e-58 | (Populus trichocarpa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA1283 | 23 | 47 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G66140.1 | 4e-34 | zinc finger protein 4 |
Publications ? help Back to Top | |||
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