PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SMil_00028558-RA_Salv
Organism
Salvia miltiorrhiza
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Mentheae; Salvia
Family B3
Protein Properties Length: 158aa    MW: 17470.1 Da    PI: 7.4102
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SMil_00028558-RA_SalvgenomeNDCTCMView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B339.11.3e-12731393599
                            EEEEEETTS.-EEEEEE..EEETTE.EEE-TTHHHHHHHHT--TT-EEEEE.E-SS.SEE..EEEEE-S CS
                     B3  35 tltledesg.rsWevkliyrkksgr.yvltkGWkeFvkangLkegDfvvFk.ldgr.sefelvvkvfrk 99 
                             + l  ++g ++W+  +  +++ +r  +  +GWk+Fv +n+Lk+gD +vF+ l+++ +  +l+v ++r+
  SMil_00028558-RA_Salv  73 AVPLVLRHGdKEWQTLY--NGGCSRpRIEYAGWKSFVVDNNLKVGDACVFEvLESStEILRLRVLILRN 139
                            44455555559******..88888855666*********************544555777777777765 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.109.8E-1538140IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019363.66E-1439137IPR015300DNA-binding pseudobarrel domain
CDDcd100172.00E-1542138No hitNo description
SMARTSM010190.005644140IPR003340B3 DNA binding domain
PROSITE profilePS5086310.33444140IPR003340B3 DNA binding domain
PfamPF023626.2E-1073138IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 158 aa     Download sequence    Send to blast
MSSRPTAVKE EICRMNEGNT GGGVISSSAE VDGLRCLSGD KPFFDVILSK SHIDPPHCLR  60
VPTHILPSLP SVAVPLVLRH GDKEWQTLYN GGCSRPRIEY AGWKSFVVDN NLKVGDACVF  120
EVLESSTEIL RLRVLILRNT MYLPPQLLPS DGRTPETR
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A4D9A0K31e-61A0A4D9A0K3_SALSN; Uncharacterized protein
STRINGXP_010097681.12e-31(Morus notabilis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA18192154
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G33280.17e-10B3 family protein