PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | SMil_00028410-RA_Salv | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Mentheae; Salvia
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Family | B3 | ||||||||
Protein Properties | Length: 707aa MW: 80009 Da PI: 5.1646 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 54.4 | 2.2e-17 | 324 | 412 | 1 | 88 |
EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTE.EEE-TTHHHHHHHHT--TT-EEEEEE-SS CS B3 1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgr.yvltkGWkeFvkangLkegDfvvFkldgr 87 f+k+++ s++ k + + +p ++++h++ ++++ + +l+d++grsWev+l+ + + + +t+GW +F angLk+gDf+ F l ++ SMil_00028410-RA_Salv 324 FVKKMLDSYSRKPQ-VDIPLAHLKRHNLGTRKPAKAVLNDPEGRSWEVTLQLNSYAEIrSRMTNGWIQFYTANGLKTGDFCQFCLLKD 410 89999999998886.***********99999*******************885555545889*********************98776 PP .S CS B3 88 .s 88 s SMil_00028410-RA_Salv 411 qS 412 33 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.40.330.10 | 2.7E-5 | 217 | 293 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 7.46E-15 | 321 | 410 | IPR015300 | DNA-binding pseudobarrel domain |
PROSITE profile | PS50863 | 11.773 | 323 | 423 | IPR003340 | B3 DNA binding domain |
Gene3D | G3DSA:2.40.330.10 | 1.1E-16 | 323 | 411 | IPR015300 | DNA-binding pseudobarrel domain |
SMART | SM01019 | 6.4E-7 | 324 | 417 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 1.4E-14 | 324 | 413 | IPR003340 | B3 DNA binding domain |
CDD | cd10017 | 1.13E-13 | 324 | 412 | No hit | No description |
Pfam | PF05911 | 3.9E-40 | 410 | 658 | IPR008587 | Filament-like plant protein |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 707 aa Download sequence Send to blast |
MPTTLDGLRY IESDELPYFK CPPEVERERI GLVPTEILER CQHYNTYRVC VQSGKSITDL 60 SLSPTVSQET RTEFFVQWRE EIDFLSEHDE IVEQGGDDSF GLTCVVSCIQ RIPVRMMDIT 120 YGIYVFSVFV MNYNTDGICI VYSNSCYVLL PRKLLAMWAS IRLSMHGQAD RFGALELLWP 180 SPRPFRLSAL ETTRKTNNRV SATSANTMAP PQQIPIPPSF ILIMTPGTFE EQVILAPMVC 240 EALRTFKKTP KGFVLATVLG EWEIGLAKNE ENGLPMLKHG WPQFCERHKI QAGQDEDEEE 300 GDEEVVEEAE ADIEDLAIHE HYGFVKKMLD SYSRKPQVDI PLAHLKRHNL GTRKPAKAVL 360 NDPEGRSWEV TLQLNSYAEI RSRMTNGWIQ FYTANGLKTG DFCQFCLLKD QSSRSKMSLM 420 DDFVEMEKLA IVAVDPQLGA SFDVDSNDRA LVVHDNYSET GHELKAKDPL SKKPDGDWLQ 480 NVTNMILEQH NASRRSIDEL LEDVRMSLHS IRHPEASQPL PISGYITWRS SPPSSPSPIA 540 LIQESSTEFL QPDMNRSITR LIELIGNMKS SNSKVDDYEI HAFRWKKSDL SAVLQEFIDS 600 CNKLLNGKIS FEKFTGDLAY TFGWIINSCV VFQDHSTVTD EFRKHLGGDG PGTVMLEMEK 660 MHSAYKVEIK GLKDELSFIK SSGKALDVSS SMSGRQAVAT RHCKPAE |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G31640.1 | 1e-06 | B3 family protein |