PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SMil_00028410-RA_Salv
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Mentheae; Salvia
Family B3
Protein Properties Length: 707aa    MW: 80009 Da    PI: 5.1646
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SMil_00028410-RA_SalvgenomeNDCTCMView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B354.42.2e-17324412188
                            EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTE.EEE-TTHHHHHHHHT--TT-EEEEEE-SS CS
                     B3   1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgr.yvltkGWkeFvkangLkegDfvvFkldgr 87 
                            f+k+++ s++ k + + +p  ++++h++ ++++ + +l+d++grsWev+l+ + + +    +t+GW +F  angLk+gDf+ F l ++
  SMil_00028410-RA_Salv 324 FVKKMLDSYSRKPQ-VDIPLAHLKRHNLGTRKPAKAVLNDPEGRSWEVTLQLNSYAEIrSRMTNGWIQFYTANGLKTGDFCQFCLLKD 410
                            89999999998886.***********99999*******************885555545889*********************98776 PP

                            .S CS
                     B3  88 .s 88 
                             s
  SMil_00028410-RA_Salv 411 qS 412
                            33 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.102.7E-5217293IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019367.46E-15321410IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086311.773323423IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.101.1E-16323411IPR015300DNA-binding pseudobarrel domain
SMARTSM010196.4E-7324417IPR003340B3 DNA binding domain
PfamPF023621.4E-14324413IPR003340B3 DNA binding domain
CDDcd100171.13E-13324412No hitNo description
PfamPF059113.9E-40410658IPR008587Filament-like plant protein
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 707 aa     Download sequence    Send to blast
MPTTLDGLRY IESDELPYFK CPPEVERERI GLVPTEILER CQHYNTYRVC VQSGKSITDL  60
SLSPTVSQET RTEFFVQWRE EIDFLSEHDE IVEQGGDDSF GLTCVVSCIQ RIPVRMMDIT  120
YGIYVFSVFV MNYNTDGICI VYSNSCYVLL PRKLLAMWAS IRLSMHGQAD RFGALELLWP  180
SPRPFRLSAL ETTRKTNNRV SATSANTMAP PQQIPIPPSF ILIMTPGTFE EQVILAPMVC  240
EALRTFKKTP KGFVLATVLG EWEIGLAKNE ENGLPMLKHG WPQFCERHKI QAGQDEDEEE  300
GDEEVVEEAE ADIEDLAIHE HYGFVKKMLD SYSRKPQVDI PLAHLKRHNL GTRKPAKAVL  360
NDPEGRSWEV TLQLNSYAEI RSRMTNGWIQ FYTANGLKTG DFCQFCLLKD QSSRSKMSLM  420
DDFVEMEKLA IVAVDPQLGA SFDVDSNDRA LVVHDNYSET GHELKAKDPL SKKPDGDWLQ  480
NVTNMILEQH NASRRSIDEL LEDVRMSLHS IRHPEASQPL PISGYITWRS SPPSSPSPIA  540
LIQESSTEFL QPDMNRSITR LIELIGNMKS SNSKVDDYEI HAFRWKKSDL SAVLQEFIDS  600
CNKLLNGKIS FEKFTGDLAY TFGWIINSCV VFQDHSTVTD EFRKHLGGDG PGTVMLEMEK  660
MHSAYKVEIK GLKDELSFIK SSGKALDVSS SMSGRQAVAT RHCKPAE
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G31640.11e-06B3 family protein