PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SMil_00028381-RA_Salv
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Mentheae; Salvia
Family ERF
Protein Properties Length: 293aa    MW: 32414.4 Da    PI: 5.6563
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SMil_00028381-RA_SalvgenomeNDCTCMView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP266.84.2e-21123173256
                    AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56 
                             y+GVr+++ +g+WvAeIr p++   r+r +lg+f+taeeAa a+++a+ kl+ge
  SMil_00028381-RA_Salv 123 LYRGVRQRH-WGKWVAEIRLPRN---RTRLWLGTFDTAEEAALAYDKAAFKLRGE 173
                            59******9.**********955...5**************************97 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000182.20E-35122182No hitNo description
SMARTSM003803.2E-39123186IPR001471AP2/ERF domain
SuperFamilySSF541716.54E-24123181IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.101.5E-32123181IPR001471AP2/ERF domain
PROSITE profilePS5103223.327123180IPR001471AP2/ERF domain
PRINTSPR003672.5E-11124135IPR001471AP2/ERF domain
PfamPF008475.8E-15124173IPR001471AP2/ERF domain
PRINTSPR003672.5E-11146162IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 293 aa     Download sequence    Send to blast
MAMAIDTYNS GSNQILYADS CREELMQALQ PFMKSAASSP DSFSLLPSAS PSTSLSSFDP  60
SSFSSQSNAY YTSIPPRIQI SDDQILTQIQ AQSLLNQNPF SGFLGPKPAL MKQPGTPPKP  120
AKLYRGVRQR HWGKWVAEIR LPRNRTRLWL GTFDTAEEAA LAYDKAAFKL RGEFARLNFP  180
HLKHHLCHEF KPLHSSVDAK LQAICEGLAE SQKQRNSDQS CDLSTDLPEN ASRQLLRVKM  240
EASPSPSPSE EVSSASPESD AAFLDFPAEP SFGDCDNLLL EKYPSVEIDW AAL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A2e-21122180160ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
2gcc_A2e-21121180363ATERF1
3gcc_A2e-21121180363ATERF1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankDQ2118362e-41DQ211836.1 Broussonetia papyrifera putative dehydration-responsive element binding protein mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011090520.11e-102ethylene-responsive transcription factor ERF060
SwissprotQ8H1E41e-67RAP24_ARATH; Ethylene-responsive transcription factor RAP2-4
TrEMBLA0A4D9AKF51e-117A0A4D9AKF5_SALSN; EREBP-like factor
STRINGMigut.L00108.1.p7e-81(Erythranthe guttata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA16102471
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G78080.13e-50related to AP2 4
Publications ? help Back to Top
  1. Pati A,Vasquez-Robinet C,Heath LS,Grene R,Murali TM
    XcisClique: analysis of regulatory bicliques.
    BMC Bioinformatics, 2006. 7: p. 218
    [PMID:16630346]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Iwase A, et al.
    WIND1-based acquisition of regeneration competency in Arabidopsis and rapeseed.
    J. Plant Res., 2015. 128(3): p. 389-97
    [PMID:25810222]
  4. Ikeuchi M, et al.
    PRC2 represses dedifferentiation of mature somatic cells in Arabidopsis.
    Nat Plants, 2015. 1: p. 15089
    [PMID:27250255]
  5. Iwase A, et al.
    WIND1 Promotes Shoot Regeneration through Transcriptional Activation of ENHANCER OF SHOOT REGENERATION1 in Arabidopsis.
    Plant Cell, 2017. 29(1): p. 54-69
    [PMID:28011694]