PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | SMil_00028381-RA_Salv | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Mentheae; Salvia
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Family | ERF | ||||||||
Protein Properties | Length: 293aa MW: 32414.4 Da PI: 5.6563 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 66.8 | 4.2e-21 | 123 | 173 | 2 | 56 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56 y+GVr+++ +g+WvAeIr p++ r+r +lg+f+taeeAa a+++a+ kl+ge SMil_00028381-RA_Salv 123 LYRGVRQRH-WGKWVAEIRLPRN---RTRLWLGTFDTAEEAALAYDKAAFKLRGE 173 59******9.**********955...5**************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00018 | 2.20E-35 | 122 | 182 | No hit | No description |
SMART | SM00380 | 3.2E-39 | 123 | 186 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 6.54E-24 | 123 | 181 | IPR016177 | DNA-binding domain |
Gene3D | G3DSA:3.30.730.10 | 1.5E-32 | 123 | 181 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 23.327 | 123 | 180 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 2.5E-11 | 124 | 135 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 5.8E-15 | 124 | 173 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 2.5E-11 | 146 | 162 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 293 aa Download sequence Send to blast |
MAMAIDTYNS GSNQILYADS CREELMQALQ PFMKSAASSP DSFSLLPSAS PSTSLSSFDP 60 SSFSSQSNAY YTSIPPRIQI SDDQILTQIQ AQSLLNQNPF SGFLGPKPAL MKQPGTPPKP 120 AKLYRGVRQR HWGKWVAEIR LPRNRTRLWL GTFDTAEEAA LAYDKAAFKL RGEFARLNFP 180 HLKHHLCHEF KPLHSSVDAK LQAICEGLAE SQKQRNSDQS CDLSTDLPEN ASRQLLRVKM 240 EASPSPSPSE EVSSASPESD AAFLDFPAEP SFGDCDNLLL EKYPSVEIDW AAL |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1gcc_A | 2e-21 | 122 | 180 | 1 | 60 | ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1 |
2gcc_A | 2e-21 | 121 | 180 | 3 | 63 | ATERF1 |
3gcc_A | 2e-21 | 121 | 180 | 3 | 63 | ATERF1 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}. |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | DQ211836 | 2e-41 | DQ211836.1 Broussonetia papyrifera putative dehydration-responsive element binding protein mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_011090520.1 | 1e-102 | ethylene-responsive transcription factor ERF060 | ||||
Swissprot | Q8H1E4 | 1e-67 | RAP24_ARATH; Ethylene-responsive transcription factor RAP2-4 | ||||
TrEMBL | A0A4D9AKF5 | 1e-117 | A0A4D9AKF5_SALSN; EREBP-like factor | ||||
STRING | Migut.L00108.1.p | 7e-81 | (Erythranthe guttata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA1610 | 24 | 71 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G78080.1 | 3e-50 | related to AP2 4 |
Publications ? help Back to Top | |||
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