PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SMil_00028363-RA_Salv
Organism
Salvia miltiorrhiza
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Mentheae; Salvia
Family WRKY
Protein Properties Length: 574aa    MW: 63460.3 Da    PI: 6.3095
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SMil_00028363-RA_SalvgenomeNDCTCMView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY99.42.3e-31324379258
                            --SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS CS
                   WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnh 58 
                            +DgynWrKYGqK+vk se+prsYY+Ct+a+Cpvkkkvers+ d++v ei+Y+geHnh
  SMil_00028363-RA_Salv 324 SDGYNWRKYGQKHVKASECPRSYYKCTYANCPVKKKVERSH-DGRVSEIVYKGEHNH 379
                            7****************************************.*************** PP
2WRKY104.17.5e-33467525159
                            ---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
                   WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                            ldDgy+WrKYGqK+vkg+++prsYYrCt+agC+v+k+vers+ dpk+v++ Yeg+H he
  SMil_00028363-RA_Salv 467 LDDGYKWRKYGQKVVKGNPHPRSYYRCTYAGCSVRKQVERSSADPKAVITSYEGKHSHE 525
                            59********************************************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.804.3E-27313382IPR003657WRKY domain
PROSITE profilePS5081123.135318382IPR003657WRKY domain
SuperFamilySSF1182902.88E-24320382IPR003657WRKY domain
SMARTSM007741.8E-34323381IPR003657WRKY domain
PfamPF031062.4E-24325379IPR003657WRKY domain
Gene3DG3DSA:2.20.25.801.4E-35453527IPR003657WRKY domain
SuperFamilySSF1182904.58E-29459527IPR003657WRKY domain
PROSITE profilePS5081136.254462527IPR003657WRKY domain
SMARTSM007742.3E-38467526IPR003657WRKY domain
PfamPF031067.4E-26468524IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 574 aa     Download sequence    Send to blast
LILNIILLRK WSWQQWSECE EEEVEKRPSS IGLLKITFFS RESEMGETSV EDAAAAKPKP  60
TIVVPPRGSM VESLFTSGLG AMGFSPGPMT LVSSFFSDQG PFSFSQLLAG AIASPKLRDY  120
ANEESWGDSS ENCKTSDDAG FKRNRPMTLV VAAPESLSPP FMLPPGLTPS GLLNSPGFLS  180
PLQLVIIQID RNAVILMICL GGFVKRDSWN DGIGIWSCRS DQFLHLNLSA EPFWNVPPTS  240
TGARNSSGRV FPILYADACR ASALACRYLH EALVSHSSPS PSETLTEQIN SEPRQLESSK  300
IESSEVSQSD KKAAYVTTGD KPASDGYNWR KYGQKHVKAS ECPRSYYKCT YANCPVKKKV  360
ERSHDGRVSE IVYKGEHNHL PPQSNKRKKD TSVALDREVN NVDENVQELQ NDETEEGPVI  420
VIDDENDDEP LAKRRSSDEG QSVPASSHQT ITESKIVVQT RSEVDLLDDG YKWRKYGQKV  480
VKGNPHPRSY YRCTYAGCSV RKQVERSSAD PKAVITSYEG KHSHEIPAGK YMSGPAANAQ  540
MQRVTAKAPS ISREMEFGNQ APITLLLKEE EIAV
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A1e-34325528878Probable WRKY transcription factor 4
2lex_A1e-34325528878Probable WRKY transcription factor 4
Search in ModeBase
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKM8231360.0KM823136.1 Salvia miltiorrhiza WRKY protein (WRKY13) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011098678.10.0probable WRKY transcription factor 4
TrEMBLA0A0D5Y9870.0A0A0D5Y987_SALMI; WRKY protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA43142344
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G13960.11e-105WRKY DNA-binding protein 4