PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

SMil_00028245-RA_Salv

Organism

Salvia miltiorrhiza

Taxonomic ID

226208

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Mentheae; Salvia

Family

LBD

Protein Properties

Length: 287aa MW: 31378.5 Da PI: 8.3547

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
SMil_00028245-RA_Salv	genome	NDCTCM	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	72.6	7.7e-23	4	135	1	98
DUF260 1 aCaaCkvlrrkCakdCvlapyf.....paeqpkkfanvhklFGasnvlkllkalpeeer............................. 54 +C++C+vlr++C ++C ++p++ p++q++++ +++k++G++ +++l++a p + r SMil_00028245-RA_Salv 4 SCNGCRVLRKGCGDNCSIRPCLewiksPDSQANATVFLAKFYGRAGLMNLINAGPSNLRpgpsailsisfqqipasiqylltylslrh 91 6************************************************************************************9 PP DUF260 55 edamsslvyeAearardPvyGavgvilklqqqleqlkaelallk 98 ++++sl+yeA+ r+ +P+yG++g++++ ++ql+++++e++l++ SMil_00028245-RA_Salv 92 AAIFRSLLYEACGRIVNPIYGSIGLLWSDSWQLCHSAVEAVLRG 135 99*********************************9998876 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50891	11.317	3	138	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	2.7E-9	4	63	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	1.6E-6	90	131	IPR004883	Lateral organ boundaries, LOB

Sequence ? help Back to Top
Protein Sequence Length: 287 aa Download sequence Send to blast
MRISCNGCRV LRKGCGDNCS IRPCLEWIKS PDSQANATVF LAKFYGRAGL MNLINAGPSN 60 LRPGPSAILS ISFQQIPASI QYLLTYLSLR HAAIFRSLLY EACGRIVNPI YGSIGLLWSD 120 SWQLCHSAVE AVLRGAPVTQ MTTEPKDGPP LKAYDIRHVN KEHKFSASND LRRVRNRCRF 180 KRSGKRARAS PVNVSISHDS SLSHQSEAAA EPAGTDHESR DGDSSVREDE GRGGEEGEIE 240 LELMLGFEPF SRCAKTPDSA AKRAASSAAG ESGFFCQMEL RLDCPTS

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011099556.1	1e-111	LOB domain-containing protein 41
Swissprot	Q9M886	2e-82	LBD41_ARATH; LOB domain-containing protein 41
TrEMBL	A0A2G9G5Z8	1e-104	A0A2G9G5Z8_9LAMI; Uncharacterized protein
TrEMBL	A0A2G9HGD5	1e-104	A0A2G9HGD5_9LAMI; Uncharacterized protein
STRING	Migut.H00213.1.p	1e-101	(Erythranthe guttata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA886	24	94

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G02550.1	1e-72	LOB domain-containing protein 41