PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | SMil_00028236-RA_Salv | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Mentheae; Salvia
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Family | ERF | ||||||||
Protein Properties | Length: 218aa MW: 24637.2 Da PI: 7.5026 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 56.8 | 5.6e-18 | 75 | 124 | 2 | 55 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkr..krfslgkfgtaeeAakaaiaarkkleg 55 +y+GVr+++ +g+Wv+eIr+p +r++lg+f tae+Aa+a++aa + + g SMil_00028236-RA_Salv 75 RYRGVRQRH-WGSWVSEIRHP-----LlkTRIWLGTFETAEDAARAYDAAVRMMCG 124 69******9.**********8.....334*********************987765 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00018 | 1.81E-32 | 74 | 134 | No hit | No description |
SMART | SM00380 | 6.1E-35 | 75 | 138 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 20.455 | 75 | 132 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 8.5E-20 | 75 | 133 | IPR016177 | DNA-binding domain |
Pfam | PF00847 | 6.8E-11 | 75 | 124 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 7.2E-32 | 75 | 132 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 3.8E-11 | 76 | 87 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 3.8E-11 | 98 | 114 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 218 aa Download sequence Send to blast |
MHGKCLMKCL PKLAVWDIVW DEEGRALCCQ EGDFPTLKKE KPAALLSLSL YIDFTHTLPA 60 QRSASAAAMA RPQQRYRGVR QRHWGSWVSE IRHPLLKTRI WLGTFETAED AARAYDAAVR 120 MMCGARTRTN FAYDASEPSG KLLSATLMAK LQKCHVTSLK MANKAVKQSN EAEHQAARPH 180 DDQNENGMIK SLEDDQIEQM IQELLDYSLI ELSSVMDN |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2gcc_A | 6e-15 | 74 | 131 | 4 | 62 | ATERF1 |
3gcc_A | 6e-15 | 74 | 131 | 4 | 62 | ATERF1 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00526 | DAP | Transfer from AT5G25190 | Download |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_022842116.1 | 3e-68 | ethylene-responsive transcription factor ERF003-like | ||||
Swissprot | Q94AW5 | 2e-54 | ERF03_ARATH; Ethylene-responsive transcription factor ERF003 | ||||
TrEMBL | A0A4D9BP20 | 9e-67 | A0A4D9BP20_SALSN; Uncharacterized protein | ||||
STRING | Migut.I00708.1.p | 5e-61 | (Erythranthe guttata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA1362 | 24 | 76 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G25190.1 | 9e-42 | ERF family protein |
Publications ? help Back to Top | |||
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