PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | SMil_00028065-RA_Salv | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Mentheae; Salvia
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Family | LBD | ||||||||
Protein Properties | Length: 164aa MW: 18172.4 Da PI: 8.3887 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 146.1 | 9.7e-46 | 14 | 113 | 1 | 100 |
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqle 88 +CaaCk+lrr+Ca+dCv+apyfpae+p+kfa vhk+FGasnv k+l++lpe++r da+ss+vyeA+ar+rdPvyG+vg i++lqqq++ SMil_00028065-RA_Salv 14 PCAACKLLRRRCAEDCVFAPYFPAEEPHKFASVHKVFGASNVNKMLQDLPEHQRGDAVSSMVYEANARVRDPVYGCVGAISSLQQQID 101 7*************************************************************************************** PP DUF260 89 qlkaelallkee 100 l+++la +++e SMil_00028065-RA_Salv 102 ALQTQLAIAQAE 113 *******99876 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50891 | 27.314 | 13 | 114 | IPR004883 | Lateral organ boundaries, LOB |
Pfam | PF03195 | 2.9E-45 | 14 | 111 | IPR004883 | Lateral organ boundaries, LOB |
Sequence ? help Back to Top |
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Protein Sequence Length: 164 aa Download sequence Send to blast |
MKESSSRKQG AASPCAACKL LRRRCAEDCV FAPYFPAEEP HKFASVHKVF GASNVNKMLQ 60 DLPEHQRGDA VSSMVYEANA RVRDPVYGCV GAISSLQQQI DALQTQLAIA QAEVVHMRMR 120 HYSSTSSSPD CASPSTTRGR RSHTHHPKSS FNMEVTNMDD SFWP |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5ly0_A | 6e-50 | 10 | 115 | 7 | 112 | LOB family transfactor Ramosa2.1 |
5ly0_B | 6e-50 | 10 | 115 | 7 | 112 | LOB family transfactor Ramosa2.1 |
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Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_012829903.1 | 1e-93 | PREDICTED: LOB domain-containing protein 4-like | ||||
Swissprot | Q9SHE9 | 1e-66 | LBD4_ARATH; LOB domain-containing protein 4 | ||||
TrEMBL | A0A4D9BCN8 | 1e-100 | A0A4D9BCN8_SALSN; Uncharacterized protein | ||||
STRING | Migut.D00564.1.p | 4e-93 | (Erythranthe guttata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA43 | 24 | 669 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G31320.1 | 1e-68 | LOB domain-containing protein 4 |