PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SMil_00028041-RA_Salv
Organism
Salvia miltiorrhiza
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Mentheae; Salvia
Family bHLH
Protein Properties Length: 319aa    MW: 34832.7 Da    PI: 7.3954
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SMil_00028041-RA_SalvgenomeNDCTCMView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH25.72.1e-08211252955
                            HHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                    HLH   9 ErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                             r+RR++i  + +eL +l+P       ++++ ae+L+ A +YIk Lq
  SMil_00028041-RA_Salv 211 SRQRRRKITVKTQELGKLVPGG-----QRMNTAEMLQSAYNYIKFLQ 252
                            69******************96.....7******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088812.57202251IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474593.14E-11202262IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003533.1E-8208257IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.102.1E-10209258IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000105.8E-6212252IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.20E-4223256No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 319 aa     Download sequence    Send to blast
MGCAGQCSGA ELRCVALWGR AALSSALRQS NAPRQGCTEQ RSGAGLHRAA LRRRAALRSA  60
SGARCTGLSS VSRQGNPFIN GVELLLQLDL FSAARLPGDD PELQSFLNPD DYFADSFCYS  120
LLCDDLTYHA NGLPLDWIIS QLNPTPTFSF AAPTTTIPGA LVPLPKATSS TITPAEFVLP  180
PLLPQFPAAD FSTGSCESAK NETSLSRRAC SRQRRRKITV KTQELGKLVP GGQRMNTAEM  240
LQSAYNYIKF LQAQVALLEF LGSHHQEVPF EGEEELQNLL ESPLIQEKLY STQHCLLPNK  300
LAEQVPLLKS NPHLLEKDH
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKP2574420.0KP257442.1 Salvia miltiorrhiza clone 9 basic helix-loop-helix transcription factor mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A0H3YB170.0A0A0H3YB17_SALMI; Basic helix-loop-helix transcription factor
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA38562246
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G34820.11e-16bHLH family protein