PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

SMil_00028032-RA_Salv

Organism

Salvia miltiorrhiza

Taxonomic ID

226208

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Mentheae; Salvia

Family

LBD

Protein Properties

Length: 142aa MW: 15569.8 Da PI: 8.3697

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
SMil_00028032-RA_Salv	genome	NDCTCM	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	111	8.4e-35	15	91	1	77
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGav 77 +Ca+Ck+lr +C ++C++a yfpae+p kf nvhk+FGasnv+kll+++p+++red+++sl+yeAear++dPvyG+v SMil_00028032-RA_Salv 15 PCASCKFLRLRCLSGCIFAAYFPAEEPTKFVNVHKIFGASNVSKLLNEIPPHQREDTVKSLAYEAEARLKDPVYGCV 91 7***************************************************************************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50891	20.94	14	114	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	4.2E-34	15	91	IPR004883	Lateral organ boundaries, LOB

Sequence ? help Back to Top
Protein Sequence Length: 142 aa Download sequence Send to blast
MASSSSSSSS YSSPPCASCK FLRLRCLSGC IFAAYFPAEE PTKFVNVHKI FGASNVSKLL 60 NEIPPHQRED TVKSLAYEAE ARLKDPVYGC VWGPSPFFSA RSSPFSRSLT PPMLTSCALQ 120 PETELRLMEL QTSKKPNNPS VD

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5ly0_A	3e-43	12	95	8	91	LOB family transfactor Ramosa2.1
5ly0_B	3e-43	12	95	8	91	LOB family transfactor Ramosa2.1
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Not known; ectopic expression of LOB leads to alterations in the size and shape of leaves and floral organs and causes male and female sterility.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Positively regulated within the shoot apex by both ASYMMETRIC LEAVES 1 (AS1) and ASYMMETRIC LEAVES 2 (AS2/LBD6) and by KNAT1. {ECO:0000269\|PubMed:11934861}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011097516.1	3e-48	LOB domain-containing protein 25-like
Swissprot	Q9FML4	2e-43	LOB_ARATH; Protein LATERAL ORGAN BOUNDARIES
TrEMBL	A0A1S4CXF4	1e-46	A0A1S4CXF4_TOBAC; LOB domain-containing protein 25-like
STRING	XP_009597524.1	2e-47	(Nicotiana tomentosiformis)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G27650.1	3e-43	LOB domain-containing protein 25

Publications ? help Back to Top
Xu C, et al. Control of auxin-induced callus formation by bZIP59-LBD complex in Arabidopsis regeneration. Nat Plants, 2018. 4(2): p. 108-115 [PMID:29358751] Liu J, et al. The WOX11-LBD16 Pathway Promotes Pluripotency Acquisition in Callus Cells During De Novo Shoot Regeneration in Tissue Culture. Plant Cell Physiol., 2018. 59(4): p. 734-743 [PMID:29361138]