PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SMil_00027906-RA_Salv
Organism
Salvia miltiorrhiza
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Mentheae; Salvia
Family LBD
Protein Properties Length: 170aa    MW: 18454.8 Da    PI: 8.1095
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SMil_00027906-RA_SalvgenomeNDCTCMView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260138.42.4e-4310108199
                 DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqle 88 
                            +CaaCk+lrrkC ++C+++ yfp e+p+kfanvhk+FGasnv kll++l +++r+da++sl+yeAear+rdPvyG++g i+ lq+q++
  SMil_00027906-RA_Salv  10 PCAACKFLRRKCMPGCIFSAYFPPEEPQKFANVHKIFGASNVAKLLNELLPHQRDDAVNSLAYEAEARVRDPVYGCIGAISFLQRQVD 97 
                            7*************************************************************************************** PP

                 DUF260  89 qlkaelallke 99 
                            +l++el+++++
  SMil_00027906-RA_Salv  98 RLQKELDAANA 108
                            ******99876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089126.5879110IPR004883Lateral organ boundaries, LOB
PfamPF031953.3E-4210107IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 170 aa     Download sequence    Send to blast
MASSSSYNPP CAACKFLRRK CMPGCIFSAY FPPEEPQKFA NVHKIFGASN VAKLLNELLP  60
HQRDDAVNSL AYEAEARVRD PVYGCIGAIS FLQRQVDRLQ KELDAANADL IRFACTTPPP  120
PPDPNRRIGG YNGGGGGGAR FYQTGSLPIS YAVPWNDIYN SHGGGMDGNN
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5ly0_A5e-641011511116LOB family transfactor Ramosa2.1
5ly0_B5e-641011511116LOB family transfactor Ramosa2.1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtNot known; ectopic expression of LOB leads to alterations in the size and shape of leaves and floral organs and causes male and female sterility.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Positively regulated within the shoot apex by both ASYMMETRIC LEAVES 1 (AS1) and ASYMMETRIC LEAVES 2 (AS2/LBD6) and by KNAT1. {ECO:0000269|PubMed:11934861}.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKR0765283e-97KR076528.1 Boehmeria nivea lateral organ boundaries domain protein (LBD2) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020548560.11e-83protein LATERAL ORGAN BOUNDARIES
SwissprotQ9FML44e-70LOB_ARATH; Protein LATERAL ORGAN BOUNDARIES
TrEMBLA0A4D9AL863e-95A0A4D9AL86_SALSN; Uncharacterized protein
STRINGEOY208518e-82(Theobroma cacao)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA4324669
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G63090.42e-72LBD family protein
Publications ? help Back to Top
  1. Xu C, et al.
    Control of auxin-induced callus formation by bZIP59-LBD complex in Arabidopsis regeneration.
    Nat Plants, 2018. 4(2): p. 108-115
    [PMID:29358751]
  2. Liu J, et al.
    The WOX11-LBD16 Pathway Promotes Pluripotency Acquisition in Callus Cells During De Novo Shoot Regeneration in Tissue Culture.
    Plant Cell Physiol., 2018. 59(4): p. 734-743
    [PMID:29361138]