PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | SMil_00027837-RA_Salv | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Mentheae; Salvia
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Family | LBD | ||||||||
Protein Properties | Length: 179aa MW: 19526.4 Da PI: 6.651 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 114.4 | 7.5e-36 | 7 | 107 | 1 | 100 |
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeq.pkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqql 87 +C aCk+lrr+C dC++ap+f eq +++fa+vh++FGa+nv+k+l +lp + r da++ ++yeA ar++dP+yG+v+++++lq+q+ SMil_00027837-RA_Salv 7 SCGACKFLRRRCILDCTFAPHFSYEQaAAHFAAVHRVFGARNVSKMLLRLPLHSRGDAAAMICYEALARVQDPIYGCVAHVFALQHQV 94 6***********************9978************************************************************ PP DUF260 88 eqlkaelallkee 100 + lk+e+++++++ SMil_00027837-RA_Salv 95 AMLKEEIEAIETQ 107 *******998876 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50891 | 21.044 | 6 | 108 | IPR004883 | Lateral organ boundaries, LOB |
Pfam | PF03195 | 1.4E-34 | 7 | 104 | IPR004883 | Lateral organ boundaries, LOB |
Sequence ? help Back to Top |
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Protein Sequence Length: 179 aa Download sequence Send to blast |
MTGAGSSCGA CKFLRRRCIL DCTFAPHFSY EQAAAHFAAV HRVFGARNVS KMLLRLPLHS 60 RGDAAAMICY EALARVQDPI YGCVAHVFAL QHQVAMLKEE IEAIETQMAD LVVDTSTSSL 120 HSFAPSSVGC SDQHSSCMPL SADASVNRAC CSSHIEIEHG LCLQKTLQEL QEYCYLQPS |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5ly0_A | 1e-34 | 3 | 108 | 7 | 111 | LOB family transfactor Ramosa2.1 |
5ly0_B | 1e-34 | 3 | 108 | 7 | 111 | LOB family transfactor Ramosa2.1 |
Search in ModeBase |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By auxin. {ECO:0000269|PubMed:17259263}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_027101347.1 | 5e-59 | LOB domain-containing protein 33-like | ||||
Refseq | XP_027109622.1 | 5e-59 | LOB domain-containing protein 33-like | ||||
Refseq | XP_027155343.1 | 5e-59 | LOB domain-containing protein 33-like | ||||
Swissprot | Q9LHS8 | 2e-49 | LBD33_ARATH; LOB domain-containing protein 33 | ||||
TrEMBL | A0A4D9BE18 | 1e-68 | A0A4D9BE18_SALSN; Uncharacterized protein | ||||
STRING | VIT_13s0019g02060.t01 | 9e-56 | (Vitis vinifera) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA12769 | 15 | 21 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G06080.1 | 2e-40 | LOB domain-containing protein 33 |
Publications ? help Back to Top | |||
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