PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SMil_00027837-RA_Salv
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Mentheae; Salvia
Family LBD
Protein Properties Length: 179aa    MW: 19526.4 Da    PI: 6.651
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SMil_00027837-RA_SalvgenomeNDCTCMView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260114.47.5e-3671071100
                 DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeq.pkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqql 87 
                            +C aCk+lrr+C  dC++ap+f  eq +++fa+vh++FGa+nv+k+l +lp + r da++ ++yeA ar++dP+yG+v+++++lq+q+
  SMil_00027837-RA_Salv   7 SCGACKFLRRRCILDCTFAPHFSYEQaAAHFAAVHRVFGARNVSKMLLRLPLHSRGDAAAMICYEALARVQDPIYGCVAHVFALQHQV 94 
                            6***********************9978************************************************************ PP

                 DUF260  88 eqlkaelallkee 100
                            + lk+e+++++++
  SMil_00027837-RA_Salv  95 AMLKEEIEAIETQ 107
                            *******998876 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089121.0446108IPR004883Lateral organ boundaries, LOB
PfamPF031951.4E-347104IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 179 aa     Download sequence    Send to blast
MTGAGSSCGA CKFLRRRCIL DCTFAPHFSY EQAAAHFAAV HRVFGARNVS KMLLRLPLHS  60
RGDAAAMICY EALARVQDPI YGCVAHVFAL QHQVAMLKEE IEAIETQMAD LVVDTSTSSL  120
HSFAPSSVGC SDQHSSCMPL SADASVNRAC CSSHIEIEHG LCLQKTLQEL QEYCYLQPS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5ly0_A1e-3431087111LOB family transfactor Ramosa2.1
5ly0_B1e-3431087111LOB family transfactor Ramosa2.1
Search in ModeBase
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By auxin. {ECO:0000269|PubMed:17259263}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027101347.15e-59LOB domain-containing protein 33-like
RefseqXP_027109622.15e-59LOB domain-containing protein 33-like
RefseqXP_027155343.15e-59LOB domain-containing protein 33-like
SwissprotQ9LHS82e-49LBD33_ARATH; LOB domain-containing protein 33
TrEMBLA0A4D9BE181e-68A0A4D9BE18_SALSN; Uncharacterized protein
STRINGVIT_13s0019g02060.t019e-56(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA127691521
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G06080.12e-40LOB domain-containing protein 33
Publications ? help Back to Top
  1. Bargmann BO,Birnbaum KD,Brenner ED
    An undergraduate study of two transcription factors that promote lateral root formation.
    Biochem Mol Biol Educ, 2014 May-Jun. 42(3): p. 237-45
    [PMID:24615800]