PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SMil_00027817-RA_Salv
Organism
Salvia miltiorrhiza
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Mentheae; Salvia
Family ERF
Protein Properties Length: 124aa    MW: 14102.4 Da    PI: 6.8083
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SMil_00027817-RA_SalvgenomeNDCTCMView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP266.36e-21657256
                    AP2  2 gykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkklege 56
                           +y+GVr ++ +g+++AeIrd s    + +r++lg+f+taeeAa+a++ a+ +++g+
  SMil_00027817-RA_Salv  6 KYRGVRKRP-WGKYAAEIRDSSR---QgARVWLGTFDTAEEAARAYDSAAYSMRGH 57
                           8********.**********422...24**************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.730.103.2E-32666IPR001471AP2/ERF domain
CDDcd000181.75E-27664No hitNo description
SMARTSM003801.7E-34670IPR001471AP2/ERF domain
SuperFamilySSF541711.5E-23666IPR016177DNA-binding domain
PROSITE profilePS5103223.828664IPR001471AP2/ERF domain
PfamPF008476.9E-16657IPR001471AP2/ERF domain
PRINTSPR003673.4E-12718IPR001471AP2/ERF domain
PRINTSPR003673.4E-123046IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010200Biological Processresponse to chitin
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 124 aa     Download sequence    Send to blast
MDREIKYRGV RKRPWGKYAA EIRDSSRQGA RVWLGTFDTA EEAARAYDSA AYSMRGHLAI  60
LNFPQEYNLP SSSSHFATSS SSGSGTTQGR GDDRGRQVIE FEYYDDKLLE ELLEHNDQSG  120
KKWS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A3e-37610814114Ethylene-responsive transcription factor ERF096
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015068552.13e-49ethylene-responsive transcription factor ERF096-like
SwissprotQ9LTC54e-39ERF98_ARATH; Ethylene-responsive transcription factor ERF098
TrEMBLA0A2G9I9T02e-61A0A2G9I9T0_9LAMI; Uncharacterized protein
STRINGSolyc03g005500.1.12e-48(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA21241165
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G43410.15e-26ERF family protein
Publications ? help Back to Top
  1. Van den Broeck L, et al.
    From network to phenotype: the dynamic wiring of an Arabidopsis transcriptional network induced by osmotic stress.
    Mol. Syst. Biol., 2017. 13(12): p. 961
    [PMID:29269383]