PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SMil_00027798-RA_Salv
Organism
Salvia miltiorrhiza
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Mentheae; Salvia
Family MYB
Protein Properties Length: 403aa    MW: 43246.7 Da    PI: 5.1959
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SMil_00027798-RA_SalvgenomeNDCTCMView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding50.83.9e-1680125147
                            TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
        Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                            +g+W+++Ed  l ++v  +G ++W++Iar ++ gR++k+c++rw + 
  SMil_00027798-RA_Salv  80 KGPWSPDEDAMLSQLVGNFGARNWSLIARGIP-GRSGKSCRLRWCNQ 125
                            79******************************.***********985 PP
2Myb_DNA-binding57.43.4e-18132176147
                            TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
        Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                            r+++T eEd ++++a+  +G++ W++Iar ++ gRt++ +k++w++ 
  SMil_00027798-RA_Salv 132 RKPFTDEEDRIILQAHSIHGNK-WASIARLLP-GRTDNAIKNHWNST 176
                            789*******************.*********.***********986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129418.32875126IPR017930Myb domain
SuperFamilySSF466893.02E-3077173IPR009057Homeodomain-like
SMARTSM007171.3E-1379128IPR001005SANT/Myb domain
PfamPF002491.8E-1580125IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.4E-2581133IPR009057Homeodomain-like
CDDcd001675.21E-1382124No hitNo description
PROSITE profilePS5129427.706127181IPR017930Myb domain
SMARTSM007171.5E-17131179IPR001005SANT/Myb domain
PfamPF002491.0E-15132176IPR001005SANT/Myb domain
CDDcd001672.20E-13134177No hitNo description
Gene3DG3DSA:1.10.10.606.6E-24134180IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009751Biological Processresponse to salicylic acid
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 403 aa     Download sequence    Send to blast
LRIPSDFHQF QLWSNSASIN LTKLKRISVT SMEIDTQAAA EVCGGGGEVE MVAGGVGEDE  60
KLVMLEDGGG ESKKSLDRVK GPWSPDEDAM LSQLVGNFGA RNWSLIARGI PGRSGKSCRL  120
RWCNQLDPAV KRKPFTDEED RIILQAHSIH GNKWASIARL LPGRTDNAIK NHWNSTLRRR  180
CLELGKSKLE PGTLVEDTSA EKSKASSEET PSYGDAYSVK SSEGKDVSSL ERVDDSNLLE  240
KAQLGVQYIE KSTGPLAVCR PVARISAFTV YNPIDGTETV CPSPRVASFP SLPVSNSDAG  300
TSKLLEGGGS ELTLMVPQQC GHGCCETSNG MAAVNSLLGP EFMDHVEPPS FTSHELAALA  360
ADISSVAWSK SGLESSNIKA MDNMACGLLC SNSTNERGIL ETM
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A2e-41771804107B-MYB
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00337DAPTransfer from AT3G09230Download
Motif logo
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Slightly induced by salicylic acid. {ECO:0000269|PubMed:16463103}.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKF0594070.0KF059407.1 Salvia miltiorrhiza MYB-related transcription factor (MYB53) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011094946.10.0transcription factor MYB1
SwissprotQ425756e-93MYB1_ARATH; Transcription factor MYB1
TrEMBLA0A059PSP00.0A0A059PSP0_SALMI; MYB-related transcription factor
STRINGMigut.J00247.1.p1e-157(Erythranthe guttata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA26112454
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G09230.13e-91myb domain protein 1
Publications ? help Back to Top
  1. Wang T, et al.
    Salt-Related MYB1 Coordinates Abscisic Acid Biosynthesis and Signaling during Salt Stress in Arabidopsis.
    Plant Physiol., 2015. 169(2): p. 1027-41
    [PMID:26243618]
  2. Nguyen HT, et al.
    A Transcription Factor γMYB1 Binds to the P1BS cis-Element and Activates PLA2-γ Expression with its Co-Activator γMYB2.
    Plant Cell Physiol., 2016. 57(4): p. 784-97
    [PMID:26872838]
  3. Sanz-Fernández M, et al.
    Screening Arabidopsis mutants in genes useful for phytoremediation.
    J. Hazard. Mater., 2017. 335: p. 143-151
    [PMID:28441590]
  4. Verma N,Burma PK
    Regulation of tapetum-specific A9 promoter by transcription factors AtMYB80, AtMYB1 and AtMYB4 in Arabidopsis thaliana and Nicotiana tabacum.
    Plant J., 2017. 92(3): p. 481-494
    [PMID:28849604]