PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | SMil_00027756-RA_Salv | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Mentheae; Salvia
|
||||||||
Family | bHLH | ||||||||
Protein Properties | Length: 100aa MW: 11291 Da PI: 4.7121 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 11.8 | 0.00045 | 34 | 57 | 32 | 55 |
..TTS-STCHHHHHHHHHHHHHHH CS HLH 32 kapskKlsKaeiLekAveYIksLq 55 +++ + +s ae+L++ eYIk+ q SMil_00027756-RA_Salv 34 GTKEREMSQAEVLRQIWEYIKDQQ 57 566777***************987 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF47592 | 4.91E-19 | 18 | 93 | IPR003121 | SWIB/MDM2 domain |
SMART | SM00151 | 6.2E-9 | 19 | 100 | IPR019835 | SWIB domain |
Gene3D | G3DSA:1.10.245.10 | 3.9E-22 | 23 | 98 | IPR003121 | SWIB/MDM2 domain |
Pfam | PF02201 | 1.2E-19 | 24 | 93 | IPR003121 | SWIB/MDM2 domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0005515 | Molecular Function | protein binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 100 aa Download sequence Send to blast |
MAQDTKRQKV NVESGTDAPV PIVIISEALA SFFGTKEREM SQAEVLRQIW EYIKDQQLED 60 PLSSTTIVCD EKLHDLLGCE SISALEVPEM LAKRHLFKKS |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_022852606.1 | 5e-46 | uncharacterized protein LOC111374196 isoform X2 | ||||
TrEMBL | A0A4D9BVJ6 | 4e-50 | A0A4D9BVJ6_SALSN; Upstream activation factor subunit UAF30 | ||||
STRING | Migut.H01782.1.p | 5e-39 | (Erythranthe guttata) |