PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

SMil_00027708-RA_Salv

Organism

Salvia miltiorrhiza

Taxonomic ID

226208

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Mentheae; Salvia

Family

WRKY

Protein Properties

Length: 578aa MW: 63387.6 Da PI: 6.1709

Description

WRKY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
SMil_00027708-RA_Salv	genome	NDCTCM	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRKY	97.3	1e-30	426	484	2	59
--SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 +D ++WrKYGqK++kgs++pr+YYrC+s+ gC+++k+vers++dp++++itY++eHnh+ SMil_00027708-RA_Salv 426 SDLWAWRKYGQKPIKGSPYPRGYYRCSSSkGCSARKQVERSRTDPNMLVITYTSEHNHP 484 699**********************998**************************7 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50811	32.994	420	486	IPR003657	WRKY domain
Gene3D	G3DSA:2.20.25.80	1.7E-30	424	486	IPR003657	WRKY domain
SuperFamily	SSF118290	4.58E-26	424	486	IPR003657	WRKY domain
SMART	SM00774	1.4E-37	425	485	IPR003657	WRKY domain
Pfam	PF03106	1.4E-25	427	484	IPR003657	WRKY domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0009555	Biological Process	pollen development
GO:0009793	Biological Process	embryo development ending in seed dormancy
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 578 aa Download sequence Send to blast
MCSHYLLKKK KKKRKMENYQ GDLTDIIRAT GGAETPAAAP DWHFPANPIT FSTNPADDFG 60 DPFAHLRDPL IHIDAPPPLP GFFHGSDVIK PSSVDDSNLG HKIIDDEMKR PPNIFSRMLQ 120 ISPSPKLPLP LPLPCDSPVV VAPTGLKGVA PMLVPNDHTL ISPSNSRGCL MESSLQISSP 180 RNTGIRRSSP SSLSLFNIIS LPFQPSLSLS LVGCPLLVEE EEEEEEDGEF QGDLTDIIRA 240 TGGAETPAAA PDWHFPANPI TFSTNPADDF GDPFAHLRDP LIHIDAPPPL PGFFHGSDVI 300 KPSSVDDSNL GHKIIDDEMK RPPNIFSRML QISPTPKPPL QLPLPCDSPV VVAPTGLKGV 360 APMLVPNDHT LISPSNSRGC LMESSLQISS PRNTGIRRRK SQAKKVVCIP APAPANSRPS 420 GEIVPSDLWA WRKYGQKPIK GSPYPRGYYR CSSSKGCSAR KQVERSRTDP NMLVITYTSE 480 HNHPWPTQRN ALAGSTRSQP SKKSINPKEE QKESGVKEEV DNNEQSYKPA LPESQDSFFA 540 EIEADSLDML FTQGFDDRDT KALDPFGFYD WGHDHTDS

Sequence ? help Back to Top

Protein Sequence Length: 578 aa Download sequence Send to blast

MCSHYLLKKK KKKRKMENYQ GDLTDIIRAT GGAETPAAAP DWHFPANPIT FSTNPADDFG  60
DPFAHLRDPL IHIDAPPPLP GFFHGSDVIK PSSVDDSNLG HKIIDDEMKR PPNIFSRMLQ  120
ISPSPKLPLP LPLPCDSPVV VAPTGLKGVA PMLVPNDHTL ISPSNSRGCL MESSLQISSP  180
RNTGIRRSSP SSLSLFNIIS LPFQPSLSLS LVGCPLLVEE EEEEEEDGEF QGDLTDIIRA  240
TGGAETPAAA PDWHFPANPI TFSTNPADDF GDPFAHLRDP LIHIDAPPPL PGFFHGSDVI  300
KPSSVDDSNL GHKIIDDEMK RPPNIFSRML QISPTPKPPL QLPLPCDSPV VVAPTGLKGV  360
APMLVPNDHT LISPSNSRGC LMESSLQISS PRNTGIRRRK SQAKKVVCIP APAPANSRPS  420
GEIVPSDLWA WRKYGQKPIK GSPYPRGYYR CSSSKGCSAR KQVERSRTDP NMLVITYTSE  480
HNHPWPTQRN ALAGSTRSQP SKKSINPKEE QKESGVKEEV DNNEQSYKPA LPESQDSFFA  540
EIEADSLDML FTQGFDDRDT KALDPFGFYD WGHDHTDS

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5w3x_B	2e-25	400	487	2	80	Disease resistance protein RRS1
5w3x_D	2e-25	400	487	2	80	Disease resistance protein RRS1
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Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	6	14	LKKKKKKRK
2	8	14	KKKKKRK
3	8	15	KKKKKRKM
4	9	14	KKKKRK

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}.

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	KM823163	0.0	KM823163.1 Salvia miltiorrhiza WRKY protein (WRKY40) mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011096716.1	1e-151	probable WRKY transcription factor 14
Swissprot	O64747	5e-79	WRK35_ARATH; Probable WRKY transcription factor 35
TrEMBL	A0A0D5YA14	0.0	A0A0D5YA14_SALMI; WRKY protein
STRING	cassava4.1_030132m	1e-119	(Manihot esculenta)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA6701	24	33

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G34830.1	1e-78	WRKY DNA-binding protein 35

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546]