PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SMil_00027695-RA_Salv
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Mentheae; Salvia
Family B3
Protein Properties Length: 294aa    MW: 33557.1 Da    PI: 10.0657
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SMil_00027695-RA_SalvgenomeNDCTCMView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B352.49.4e-17154244199
                            EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSS CS
                     B3   1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrs 88 
                            f+k +++s+v +  +l lp +f+e++  k  +++ ++le+e+g ++e  +   +k+ +  l++GW+ F+ +++L++gD ++F+l++ +
  SMil_00027695-RA_Salv 154 FIKSMVRSHVYSCFWLGLPSRFCEDYLPK--STVGMVLENEQGSEYEALF--IGKRAG--LSGGWRAFALDHKLDDGDALIFELIEPT 235
                            89************************533..5678***************..555544..9***********************9877 PP

                            EE..EEEEE-S CS
                     B3  89 efelvvkvfrk 99 
                            +f  +v ++r+
  SMil_00027695-RA_Salv 236 RF--KVYIVRT 244
                            77..8888876 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.105.6E-21146247IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019363.53E-23149250IPR015300DNA-binding pseudobarrel domain
CDDcd100171.41E-24152243No hitNo description
PROSITE profilePS5086312.802154245IPR003340B3 DNA binding domain
SMARTSM010192.6E-22154245IPR003340B3 DNA binding domain
PfamPF023629.9E-15154243IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 294 aa     Download sequence    Send to blast
MSTSMGGDIR STFLMVLATM ENESGNTYED ARKQRLLENK KRFEDLGIMK LSKSLTDVTK  60
SEKPQNRQVR LKPMMSYSAE PRRSSRARNQ VSYRDDVDVE LPALRNRSKF NSSWTSYLAR  120
PAEEVKVASY EERARAFNCA EKLRSNLQTR NPSFIKSMVR SHVYSCFWLG LPSRFCEDYL  180
PKSTVGMVLE NEQGSEYEAL FIGKRAGLSG GWRAFALDHK LDDGDALIFE LIEPTRFKVY  240
IVRTSGCQNE NGCVVASDTD EKPKKKRKTK DGNQTEKPAA EVSTTRRSLR RKGN
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006344089.11e-126PREDICTED: putative B3 domain-containing protein At5g58280
SwissprotQ9FHB25e-72Y5828_ARATH; Putative B3 domain-containing protein At5g58280
TrEMBLA0A4D8ZNC31e-158A0A4D8ZNC3_SALSN; Uncharacterized protein
STRINGPGSC0003DMT4000531991e-125(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA125102022
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G58280.13e-74B3 family protein
Publications ? help Back to Top
  1. Mantegazza O, et al.
    Analysis of the arabidopsis REM gene family predicts functions during flower development.
    Ann. Bot., 2014. 114(7): p. 1507-15
    [PMID:25002525]