PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | SMil_00027695-RA_Salv | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Mentheae; Salvia
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Family | B3 | ||||||||
Protein Properties | Length: 294aa MW: 33557.1 Da PI: 10.0657 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 52.4 | 9.4e-17 | 154 | 244 | 1 | 99 |
EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSS CS B3 1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrs 88 f+k +++s+v + +l lp +f+e++ k +++ ++le+e+g ++e + +k+ + l++GW+ F+ +++L++gD ++F+l++ + SMil_00027695-RA_Salv 154 FIKSMVRSHVYSCFWLGLPSRFCEDYLPK--STVGMVLENEQGSEYEALF--IGKRAG--LSGGWRAFALDHKLDDGDALIFELIEPT 235 89************************533..5678***************..555544..9***********************9877 PP EE..EEEEE-S CS B3 89 efelvvkvfrk 99 +f +v ++r+ SMil_00027695-RA_Salv 236 RF--KVYIVRT 244 77..8888876 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.40.330.10 | 5.6E-21 | 146 | 247 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 3.53E-23 | 149 | 250 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 1.41E-24 | 152 | 243 | No hit | No description |
PROSITE profile | PS50863 | 12.802 | 154 | 245 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 2.6E-22 | 154 | 245 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 9.9E-15 | 154 | 243 | IPR003340 | B3 DNA binding domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 294 aa Download sequence Send to blast |
MSTSMGGDIR STFLMVLATM ENESGNTYED ARKQRLLENK KRFEDLGIMK LSKSLTDVTK 60 SEKPQNRQVR LKPMMSYSAE PRRSSRARNQ VSYRDDVDVE LPALRNRSKF NSSWTSYLAR 120 PAEEVKVASY EERARAFNCA EKLRSNLQTR NPSFIKSMVR SHVYSCFWLG LPSRFCEDYL 180 PKSTVGMVLE NEQGSEYEAL FIGKRAGLSG GWRAFALDHK LDDGDALIFE LIEPTRFKVY 240 IVRTSGCQNE NGCVVASDTD EKPKKKRKTK DGNQTEKPAA EVSTTRRSLR RKGN |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006344089.1 | 1e-126 | PREDICTED: putative B3 domain-containing protein At5g58280 | ||||
Swissprot | Q9FHB2 | 5e-72 | Y5828_ARATH; Putative B3 domain-containing protein At5g58280 | ||||
TrEMBL | A0A4D8ZNC3 | 1e-158 | A0A4D8ZNC3_SALSN; Uncharacterized protein | ||||
STRING | PGSC0003DMT400053199 | 1e-125 | (Solanum tuberosum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA12510 | 20 | 22 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G58280.1 | 3e-74 | B3 family protein |
Publications ? help Back to Top | |||
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