PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | SMil_00027619-RA_Salv | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Mentheae; Salvia
|
||||||||
Family | C2H2 | ||||||||
Protein Properties | Length: 112aa MW: 12389.8 Da PI: 9.9468 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 14.8 | 8.1e-05 | 32 | 54 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C++C + F ++ L H++ H SMil_00027619-RA_Salv 32 FSCNYCRRKFYSSQALGGHQNAH 54 89******************988 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF57667 | 1.51E-6 | 30 | 59 | No hit | No description |
PROSITE profile | PS50157 | 11.053 | 32 | 59 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 34 | 54 | IPR007087 | Zinc finger, C2H2 |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 112 aa Download sequence Send to blast |
MNHYEPNTSL NLSLSSSASA LASPPSSPVR VFSCNYCRRK FYSSQALGGH QNAHKLERTL 60 AKKTREFAFA HGPTSSSNPV RLSQRDVIGY GYRAYVSENQ GEISHLDLSL KL |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Probable transcription factor involved in the regulation of floral organ abscission. Participates in processes that directly or indirectly influence shedding of floral organs. {ECO:0000269|PubMed:18192438}. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_019177849.1 | 1e-30 | PREDICTED: zinc finger protein 2 | ||||
Swissprot | Q39261 | 9e-25 | ZFP2_ARATH; Zinc finger protein 2 | ||||
TrEMBL | A0A4D8ZVG6 | 8e-41 | A0A4D8ZVG6_SALSN; Uncharacterized protein | ||||
STRING | VIT_11s0052g01120.t01 | 4e-28 | (Vitis vinifera) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA8876 | 21 | 28 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT5G57520.1 | 7e-26 | zinc finger protein 2 |