PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SMil_00027545-RA_Salv
Organism
Salvia miltiorrhiza
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Mentheae; Salvia
Family Trihelix
Protein Properties Length: 507aa    MW: 56718.3 Da    PI: 7.0461
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SMil_00027545-RA_SalvgenomeNDCTCMView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix95.35.8e-3042125186
               trihelix   1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 
                            rW+++e+laL+++r+em++++r+++lk+plW+evs+k++e g++rs+k+Ckek+en+ k++k++k+g+++r+  + +++++f+qle
  SMil_00027545-RA_Salv  42 RWPREETLALLKIRSEMDTAFRDSALKAPLWDEVSRKLSELGYNRSAKKCKEKFENIYKYHKRTKDGRSSRH--NGKNYRFFEQLE 125
                            8*********************************************************************85..5557******97 PP
2trihelix94.21.3e-29349433186
               trihelix   1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 
                            rW+k e+ aLi ++++++ +++++  k+plWee+s  m++ g++r++k+Ckekwen+nk+yk++ke++k+r +e+s+tcpyf+ l+
  SMil_00027545-RA_Salv 349 RWPKAEIEALILLKTDLDLKYQDNGPKGPLWEEISTCMKKMGYNRNAKRCKEKWENINKYYKRVKESNKRR-PEDSKTCPYFSMLD 433
                            8********************************************************************97.99********9987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM007174.5E-439101IPR001005SANT/Myb domain
CDDcd122032.31E-2441106No hitNo description
PfamPF138373.7E-1941125No hitNo description
PROSITE profilePS500907.4914299IPR017877Myb-like domain
PROSITE profilePS500906.911342406IPR017877Myb-like domain
SMARTSM007170.0038346408IPR001005SANT/Myb domain
PfamPF138372.4E-21348435No hitNo description
CDDcd122037.39E-25348413No hitNo description
Sequence ? help Back to Top
Protein Sequence    Length: 507 aa     Download sequence    Send to blast
MLDSSIFVEN NGGSAPDAVR INAGGAGGGD DGDGERSSGG PRWPREETLA LLKIRSEMDT  60
AFRDSALKAP LWDEVSRKLS ELGYNRSAKK CKEKFENIYK YHKRTKDGRS SRHNGKNYRF  120
FEQLELLDTQ FSMPSTPLNH IPSYAVETTA AAAATAAMAK GISCSQEFSM PCSSQDPDAE  180
FLSASTSTAS SSGKDSEGSV KKKRKLADYL ERLMKDVLQK QEDLLNKFLE AIEKCEKDRI  240
AREEAWKVQE TARIKREQEF LAQERAIAAA KDAAVLAFLQ KITQQSPSSL NVPEILGPLF  300
EKASDKQDNV LGKPSYLQEN NGAGETSNHT DKQDNNSGGE NTIQASSSRW PKAEIEALIL  360
LKTDLDLKYQ DNGPKGPLWE EISTCMKKMG YNRNAKRCKE KWENINKYYK RVKESNKRRP  420
EDSKTCPYFS MLDSLYAKKS KKSQHNLNNL KPEHILMQMM GQQHQQGSHQ LLGEYEESGH  480
HDQEDDAESG DGYQIVANNL SSVTTLG
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1200205KKKRKL
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011099803.10.0trihelix transcription factor GT-2-like
TrEMBLA0A4D8YMJ30.0A0A4D8YMJ3_SALSN; Uncharacterized protein
STRINGMigut.H01112.1.p1e-173(Erythranthe guttata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA97942328
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G76880.18e-67Trihelix family protein