PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SMil_00027346-RA_Salv
Organism
Salvia miltiorrhiza
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Mentheae; Salvia
Family HD-ZIP
Protein Properties Length: 854aa    MW: 93256.6 Da    PI: 6.8546
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SMil_00027346-RA_SalvgenomeNDCTCMView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox58.51.1e-183088357
                           --SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS
               Homeobox  3 kRttftkeqleeLeelFeknrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57
                           k  ++t+eq+e+Le+l++ +++ps  +r++L +++    +++ +q+kvWFqNrR +ek+
  SMil_00027346-RA_Salv 30 KYVRYTPEQVEALERLYHDCPKPSSMRRQQLIRECpilsHIEPKQIKVWFQNRRCREKQ 88
                           5679*****************************************************97 PP
2START173.81.1e-541753832205
                            HHHHHHHHHHHHHHHC-TT-EEEEEXCCTTEEEEEEESSS.SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-SEEEEEEEECTT. CS
                  START   2 laeeaaqelvkkalaeepgWvkssesengdevlqkfeeskvdsgealrasgvvdmvlallveellddkeqWdetlakaetlevissg. 88 
                            +aee+++e+++ka+ ++  Wv+++ +++g++++ +++ s++++g a+ra+g+v  +++  v+e+l+d++ W ++++++++++v+ ++ 
  SMil_00027346-RA_Salv 175 IAEETLAEFLSKATGTAVEWVQMPGMKPGPDSIGIVAISHGCPGVAARACGLVGLEPT-RVAEILKDRPSWFRDCRAVDVVNVLPTAn 261
                            7899******************************************************.8888888888****************999 PP

                            .EEEEEEEEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--....-TTSEE-EESSEEEEEEEECTCEEEEEEEE-EE CS
                  START  89 .galqlmvaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppe...sssvvRaellpSgiliepksnghskvtwvehvd 171
                             g+++l +++l+a+++l+p Rdf+ +R++  + +g++v++++S++++q+ p+    +++vRae+lpSg+li+p+++g+s +++v+h++
  SMil_00027346-RA_Salv 262 gGTIELLYMQLYAPTTLAPgRDFWLLRFTSVMDDGSLVVCERSLSNTQNGPSmppVQNYVRAEMLPSGYLIRPCEGGGSIIHIVDHMN 349
                            9*************************************************9988899******************************* PP

                            --SSXXHHHHHHHHHHHHHHHHHHHHHHTXXXXX CS
                  START 172 lkgrlphwllrslvksglaegaktwvatlqrqce 205
                            l++++++++lr+l++s+++ ++++++a+++++++
  SMil_00027346-RA_Salv 350 LEAWSVPEVLRPLYESSTVLAQRITTAAVRHLRQ 383
                            *****************************99875 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5007115.5162589IPR001356Homeobox domain
SMARTSM003895.3E-162793IPR001356Homeobox domain
CDDcd000862.42E-163090No hitNo description
SuperFamilySSF466898.98E-173092IPR009057Homeodomain-like
PfamPF000463.0E-163188IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.605.8E-183288IPR009057Homeodomain-like
CDDcd146864.15E-682121No hitNo description
PROSITE profilePS5084825.094165384IPR002913START domain
CDDcd088752.07E-75169385No hitNo description
SuperFamilySSF559611.02E-37174383No hitNo description
Gene3DG3DSA:3.30.530.206.1E-22174366IPR023393START-like domain
SMARTSM002342.7E-40174384IPR002913START domain
PfamPF018521.0E-52175383IPR002913START domain
PfamPF086705.6E-50711853IPR013978MEKHLA
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009965Biological Processleaf morphogenesis
GO:0010014Biological Processmeristem initiation
GO:0010075Biological Processregulation of meristem growth
GO:0010087Biological Processphloem or xylem histogenesis
GO:0048263Biological Processdetermination of dorsal identity
GO:0080060Biological Processintegument development
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0008289Molecular Functionlipid binding
Sequence ? help Back to Top
Protein Sequence    Length: 854 aa     Download sequence    Send to blast
LWKMAMSCKE SSKAAAAAAA AAAAGMDNGK YVRYTPEQVE ALERLYHDCP KPSSMRRQQL  60
IRECPILSHI EPKQIKVWFQ NRRCREKQRK EASRLQGVNR KLTAMNKLLM EENDRLQKQV  120
SQLVYENSYF RQHTPNNPLS TKDTSCDSVV TSGQKHHLTP QHPPRDASPA GLLSIAEETL  180
AEFLSKATGT AVEWVQMPGM KPGPDSIGIV AISHGCPGVA ARACGLVGLE PTRVAEILKD  240
RPSWFRDCRA VDVVNVLPTA NGGTIELLYM QLYAPTTLAP GRDFWLLRFT SVMDDGSLVV  300
CERSLSNTQN GPSMPPVQNY VRAEMLPSGY LIRPCEGGGS IIHIVDHMNL EAWSVPEVLR  360
PLYESSTVLA QRITTAAVRH LRQIALDISQ SSVNNWGRRP AALRALSHRL SRGFNEALNG  420
FSDEGWSLIG NDGADDITIL VNSNPEKLMG LNTSFTSGYN SICSSILCAK ASMLLQNVPP  480
AILLRFLREH RSEWADTNID AYSAAAVKIG PCNFLGPRVG NYGGQVILPL AQTIEHEEAS  540
LLEVIKLEGI AHTAEEAMMP RDVLLLQLCC GMDENAVGTC SELIFAPIDA SFADDAPLLP  600
SGFRIIPLDS GKEASSPNRT LDLASALETG AAGNKPPNGL STNSCATRSV MTIAFQFAFE  660
SHMQDNVACM ARQYVRSIIS SVQRVALALS PSGFGPHAGL RSPLGTPEAH TLARWISQSY  720
RSFMGVELLK SSSGGSDSIL KALWHHSDAI MCCSMKAASV FTFANQAGVD MLETTLVALQ  780
DISLEKIFDD HGRKNVCSEF PQIMNQGFAT LPGGICSSSM GRPVSYERAI AWKVLNDDEN  840
AHCICFMFVN WSFV
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in the regulation of meristem development to promote lateral organ formation. May regulates procambial and vascular tissue formation or maintenance, and vascular development in inflorescence stems. {ECO:0000269|PubMed:15598805, ECO:0000269|PubMed:15705957, ECO:0000269|PubMed:16617092}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00200DAPTransfer from AT1G52150Download
Motif logo
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By auxin. Repressed by miR165 and miR166. {ECO:0000269|PubMed:15773855, ECO:0000269|PubMed:16033795, ECO:0000269|PubMed:16617092, ECO:0000269|PubMed:17237362}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011072422.10.0LOW QUALITY PROTEIN: homeobox-leucine zipper protein ATHB-15
SwissprotQ9ZU110.0ATB15_ARATH; Homeobox-leucine zipper protein ATHB-15
TrEMBLA0A4D8ZB400.0A0A4D8ZB40_SALSN; Homeobox-leucine zipper protein
STRINGMigut.I00906.1.p0.0(Erythranthe guttata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA45724140
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G52150.10.0HD-ZIP family protein
Publications ? help Back to Top
  1. Yamada T,Sasaki Y,Hashimoto K,Nakajima K,Gasser CS
    CORONA, PHABULOSA and PHAVOLUTA collaborate with BELL1 to confine WUSCHEL expression to the nucellus in Arabidopsis ovules.
    Development, 2016. 143(3): p. 422-6
    [PMID:26700684]