PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

SMil_00027319-RA_Salv

Organism

Salvia miltiorrhiza

Taxonomic ID

226208

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Mentheae; Salvia

Family

Dof

Protein Properties

Length: 198aa MW: 22294.8 Da PI: 8.7854

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
SMil_00027319-RA_Salv	genome	NDCTCM	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	99.2	2.6e-31	17	71	5	59
zf-Dof 5 alkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknk 59 ++cprC stntkfCyynny+ sqPr+fCk+C+r+WtkGG+lrn+P rr+++ SMil_00027319-RA_Salv 17 PSECPRCGSTNTKFCYYNNYNKSQPRHFCKSCKRHWTKGGTLRNIPAARRRRNKR 71 689*******************************************876666555 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
ProDom	PD007478	1.0E-17	7	61	IPR003851	Zinc finger, Dof-type
Pfam	PF02701	9.1E-28	18	70	IPR003851	Zinc finger, Dof-type
PROSITE profile	PS50884	25.471	18	72	IPR003851	Zinc finger, Dof-type
PROSITE pattern	PS01361	0	20	56	IPR003851	Zinc finger, Dof-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 198 aa Download sequence Send to blast
MIQQFPGEQS GASKPPPSEC PRCGSTNTKF CYYNNYNKSQ PRHFCKSCKR HWTKGGTLRN 60 IPAARRRRNK RPRASAAAAT EPRQKRLLNS NDQNRMSDIL YQALIRSSPH QGTILESNGT 120 TCAAATQNYT NTEDLMLSSF TSAPTSAEIV DLTEESSAAA PWAAELWSWN DEIDFLASLW 180 DRSDAEMMTP YKPIYQGY

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011096259.1	1e-35	dof zinc finger protein DOF1.4-like
TrEMBL	A0A4D9B101	4e-76	A0A4D9B101_SALSN; Uncharacterized protein
STRING	VIT_00s0652g00010.t01	1e-32	(Vitis vinifera)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA6171	20	33

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G60200.1	2e-23	TARGET OF MONOPTEROS 6