PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SMil_00027288-RA_Salv
Organism
Salvia miltiorrhiza
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Mentheae; Salvia
Family HD-ZIP
Protein Properties Length: 207aa    MW: 24069.2 Da    PI: 7.5938
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SMil_00027288-RA_SalvgenomeNDCTCMView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox665.2e-2155107456
                            -SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
               Homeobox   4 RttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                            ++++++eq++ Lee+F +++++  +++e+LA++lgL+ rqV vWFqNrRa++k
  SMil_00027288-RA_Salv  55 KRKLSSEQVKMLEECFGSEQKLESDRKERLAAELGLDPRQVAVWFQNRRARWK 107
                            45899***********************************************9 PP
2HD-ZIP_I/II112.72.4e-3654145293
            HD-ZIP_I/II   2 kkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLre 89 
                            +kr+ls+eqvk+LEe+F +e+kLe++rK++la eLgl+prqvavWFqnrRAR+k+ +l ++y++Lk+ + + + +++rLe+e  +L+e
  SMil_00027288-RA_Salv  54 RKRKLSSEQVKMLEECFGSEQKLESDRKERLAAELGLDPRQVAVWFQNRRARWKSNKLHEEYSKLKSDHHTAVLHKCRLETELLKLKE 141
                            8*************************************************************************************** PP

            HD-ZIP_I/II  90 elke 93 
                            +l+e
  SMil_00027288-RA_Salv 142 QLHE 145
                            *986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5007116.60149109IPR001356Homeobox domain
SMARTSM003893.3E-1952113IPR001356Homeobox domain
CDDcd000861.21E-1654110No hitNo description
PfamPF000462.3E-1855107IPR001356Homeobox domain
SuperFamilySSF466891.8E-1855119IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.607.1E-2156116IPR009057Homeodomain-like
PRINTSPR000314.2E-68089IPR000047Helix-turn-helix motif
PROSITE patternPS00027084107IPR017970Homeobox, conserved site
PRINTSPR000314.2E-689105IPR000047Helix-turn-helix motif
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 207 aa     Download sequence    Send to blast
MNPEALVDEQ MPLISQYYPD PDGIYTQFVP QPGAAKTKAR RRRRKSKGIE GVMRKRKLSS  60
EQVKMLEECF GSEQKLESDR KERLAAELGL DPRQVAVWFQ NRRARWKSNK LHEEYSKLKS  120
DHHTAVLHKC RLETELLKLK EQLHEAEKEI QRLSDGFSSN SPCSSFSMEV GAPFLGEFGM  180
EGLENVFYTS DQNYSAHGME WDNLYYM
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
14056RRRRKSKGIEGVMRKRK
24146RRRKSK
34256RRKSKGIEGVMRKRK
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By abscisic acid (ABA) and by salt stress. {ECO:0000269|PubMed:16055682}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011099589.23e-84homeobox-leucine zipper protein ATHB-40
SwissprotQ9ZU709e-63ATB21_ARATH; Homeobox-leucine zipper protein ATHB-21
TrEMBLA0A4D9A5N92e-93A0A4D9A5N9_SALSN; Homeobox-leucine zipper protein
STRINGSolyc02g085630.2.17e-81(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA12892480
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G36740.13e-45homeobox protein 40
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. González-Grandío E, et al.
    Abscisic acid signaling is controlled by a BRANCHED1/HD-ZIP I cascade in Arabidopsis axillary buds.
    Proc. Natl. Acad. Sci. U.S.A., 2017. 114(2): p. E245-E254
    [PMID:28028241]