PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | SMil_00027204-RA_Salv | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Mentheae; Salvia
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Family | NF-YC | ||||||||
Protein Properties | Length: 199aa MW: 22309.8 Da PI: 9.3431 | ||||||||
Description | NF-YC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NF-YC | 23.5 | 1.1e-07 | 117 | 189 | 18 | 90 |
NF-YC 18 nhelPlarikkilkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavtrtdifd 90 + ++P+ ri + lka++ v+++ aPv l e++++e+ + ++a++nk++ i+ av + + SMil_00027204-RA_Salv 117 RLQFPVDRIARFLKAEKYVERVGVGAPVYLVVVLEYLVIEVLELADNNAKDNKKTRTVPRHIHLAVRNDEELS 189 568**************************************99999999999886666667888887765544 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00414 | 9.0E-30 | 99 | 199 | IPR002119 | Histone H2A |
PRINTS | PR00620 | 2.5E-26 | 108 | 130 | IPR002119 | Histone H2A |
Gene3D | G3DSA:1.10.20.10 | 2.5E-38 | 109 | 197 | IPR009072 | Histone-fold |
SuperFamily | SSF47113 | 1.83E-29 | 110 | 192 | IPR009072 | Histone-fold |
Pfam | PF00125 | 2.3E-8 | 113 | 183 | IPR007125 | Histone H2A/H2B/H3 |
PRINTS | PR00620 | 2.5E-26 | 137 | 152 | IPR002119 | Histone H2A |
PRINTS | PR00620 | 2.5E-26 | 152 | 165 | IPR002119 | Histone H2A |
PRINTS | PR00620 | 2.5E-26 | 166 | 180 | IPR002119 | Histone H2A |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0000786 | Cellular Component | nucleosome | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0046982 | Molecular Function | protein heterodimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 199 aa Download sequence Send to blast |
MSILSTPRDH RIPYCHVSFR HLVEHHTGII NFSELCASRQ ECRMRVYIGI AYSSIDPFYR 60 YQVPRLGVEG KQGIGNVGKA LKGGFNAEGV ELNAHSDLAG VGAGVVGFSV SQNRKGRLQF 120 PVDRIARFLK AEKYVERVGV GAPVYLVVVL EYLVIEVLEL ADNNAKDNKK TRTVPRHIHL 180 AVRNDEELSK LLRDVMIEI |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2nqb_C | 5e-32 | 113 | 197 | 18 | 101 | Histone H2A |
2nqb_G | 5e-32 | 113 | 197 | 18 | 101 | Histone H2A |
4qlc_C | 5e-32 | 113 | 197 | 18 | 101 | Histone H2A |
4qlc_G | 5e-32 | 113 | 197 | 18 | 101 | Histone H2A |
4x23_C | 4e-32 | 113 | 197 | 4 | 87 | Histone H2A |
4x23_G | 4e-32 | 113 | 197 | 4 | 87 | Histone H2A |
4x23_M | 4e-32 | 113 | 197 | 4 | 87 | Histone H2A |
4x23_Q | 4e-32 | 113 | 197 | 4 | 87 | Histone H2A |
5gsu_C | 5e-32 | 109 | 197 | 14 | 102 | Histone H2A type 1-A |
5gsu_G | 5e-32 | 109 | 197 | 14 | 102 | Histone H2A type 1-A |
5gt0_C | 5e-32 | 109 | 197 | 14 | 102 | Histone H2A type 1-A |
5gt0_G | 5e-32 | 109 | 197 | 14 | 102 | Histone H2A type 1-A |
5wcu_C | 4e-32 | 113 | 197 | 5 | 88 | Histone H2A |
5wcu_G | 4e-32 | 113 | 197 | 5 | 88 | Histone H2A |
5wcu_M | 4e-32 | 113 | 197 | 5 | 88 | Histone H2A |
5wcu_Q | 4e-32 | 113 | 197 | 5 | 88 | Histone H2A |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
TrEMBL | A0A4D8Z0M1 | 6e-39 | A0A4D8Z0M1_SALSN; Uncharacterized protein |