PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | SMil_00027044-RA_Salv | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Mentheae; Salvia
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Family | WRKY | ||||||||
Protein Properties | Length: 294aa MW: 32001 Da PI: 8.1863 | ||||||||
Description | WRKY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRKY | 85.5 | 4.8e-27 | 202 | 256 | 2 | 55 |
--SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES- CS WRKY 2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYege 55 +Dg++WrKYGqK+ kg+++pr+YYrCt+a gCpv+k+v+r+aed +++++tY+g+ SMil_00027044-RA_Salv 202 SDGCQWRKYGQKMAKGNPCPRAYYRCTMAvGCPVRKQVQRCAEDRTILITTYKGT 256 7****************************************************96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.20.25.80 | 1.5E-29 | 186 | 256 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 3.4E-24 | 194 | 256 | IPR003657 | WRKY domain |
PROSITE profile | PS50811 | 25.339 | 196 | 262 | IPR003657 | WRKY domain |
SMART | SM00774 | 2.2E-29 | 201 | 260 | IPR003657 | WRKY domain |
Pfam | PF03106 | 5.6E-23 | 203 | 256 | IPR003657 | WRKY domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 294 aa Download sequence Send to blast |
MEKGWGLALE NSDRVGFFGS KSVFEYSQSP RLNNRSTMFP AAPPPAGEHA VVLGEVDFFS 60 AKKRPVDEVK KEINETRDLN IGLQLVTASD RSKVDDVSSD AEDRRAKIEI VERKSEEKEE 120 NGVVLVPRQF LELNKQISDE QSGSSSEERT VTGNKRINER DESEGSAPNK SPKPAPPEPL 180 PDATMRKARV SVRARSEAPM ISDGCQWRKY GQKMAKGNPC PRAYYRCTMA VGCPVRKQVQ 240 RCAEDRTILI TTYKGTTAPA APAAMSMAST TSSAASMLLA GSMPSGDGGG LTEP |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1wj2_A | 6e-18 | 192 | 263 | 8 | 78 | Probable WRKY transcription factor 4 |
2lex_A | 6e-18 | 192 | 263 | 8 | 78 | Probable WRKY transcription factor 4 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor involved in the control of processes related to senescence and pathogen defense (PubMed:12000796). Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (PubMed:12000796). Activates the transcription of the SIRK gene and represses its own expression and that of the WRKY42 genes (PubMed:12000796). Modulates phosphate homeostasis and Pi translocation by regulating PHO1 expression (PubMed:25733771). {ECO:0000269|PubMed:12000796, ECO:0000269|PubMed:25733771}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By salicylic acid, ethylene, jasmonic acid, pathogens, wounding and strongly during leaf senescence. {ECO:0000269|PubMed:11449049, ECO:0000269|PubMed:11722756}. |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | KM823153 | 0.0 | KM823153.1 Salvia miltiorrhiza WRKY protein (WRKY30) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_022865070.1 | 1e-99 | WRKY transcription factor 6-like isoform X2 | ||||
Swissprot | Q9C519 | 3e-64 | WRKY6_ARATH; WRKY transcription factor 6 | ||||
TrEMBL | D0PSE9 | 1e-114 | D0PSE9_9LAMI; WRKY transcription factor | ||||
STRING | XP_009776126.1 | 1e-82 | (Nicotiana sylvestris) | ||||
STRING | XP_009776375.1 | 2e-82 | (Nicotiana sylvestris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA945 | 24 | 92 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G62300.1 | 2e-49 | WRKY family protein |