PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

SMil_00027002-RA_Salv

Organism

Salvia miltiorrhiza

Taxonomic ID

226208

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Mentheae; Salvia

Family

TCP

Protein Properties

Length: 267aa MW: 28767.7 Da PI: 10.0061

Description

TCP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
SMil_00027002-RA_Salv	genome	NDCTCM	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	TCP	118	1.2e-36	22	128	1	89
TCP 1 aagkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgt.......ssssasec.eaessss 80 a+g+kdrhsk++T++g+RdRRvRlsa++a++f+d+qd+LG+d++sk+++WL+++ak+ai+ lt+ a + + ++++ SMil_00027002-RA_Salv 22 ATGRKDRHSKVYTAKGPRDRRVRLSAHTAIQFYDVQDRLGYDRPSKAVDWLIKKAKAAIDRLTSCrpslsagA---A--ApRPRNNNN 104 589**************************************************************76553321...2..122333333 PP TCP 81 sasnsssg...............k 89 ++sn++sg + SMil_00027002-RA_Salv 105 NNSNNNSGsfmagagagtgadlmN 128 333333333444445544444440 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03634	3.4E-33	23	143	IPR005333	Transcription factor, TCP
PROSITE profile	PS51369	33.172	25	83	IPR017887	Transcription factor TCP subgroup

Sequence ? help Back to Top
Protein Sequence Length: 267 aa Download sequence Send to blast
MKGAAQGGGE IVQVDGGQIL RATGRKDRHS KVYTAKGPRD RRVRLSAHTA IQFYDVQDRL 60 GYDRPSKAVD WLIKKAKAAI DRLTSCRPSL SAGAAAPRPR NNNNNNSNNN SGSFMAGAGA 120 GTGADLMNTM KSLFPTSSFA GFDNDPCQDS SFQTRDLGLS LQTFQADHHR QENSNIPIHG 180 SFHRIDGWNG GGGGGGGGGG AIFGQGLPFS QRELLQSNAA VNPWNQRPLI SANHHDHDQH 240 QPRGGFELGF RVPARIYGEE EAAENHR

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5zkt_A	2e-23	30	83	1	54	Putative transcription factor PCF6
5zkt_B	2e-23	30	83	1	54	Putative transcription factor PCF6
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Functional Description ? help Back to Top
Source	Description
UniProt	Plays a pivotal role in the control of morphogenesis of shoot organs by negatively regulating the expression of boundary-specific genes such as CUC genes, probably through the induction of miRNA (e.g. miR164). Participates in ovule develpment (PubMed:25378179). {ECO:0000269\|PubMed:17307931, ECO:0000269\|PubMed:25378179}.

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	KM662611	3e-52	KM662611.1 Ananas bracteatus clone 46469a microsatellite sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011100220.1	3e-85	transcription factor TCP10-like
Swissprot	O82277	3e-47	TCP10_ARATH; Transcription factor TCP10
TrEMBL	A0A4D8XUF8	1e-101	A0A4D8XUF8_SALSN; Uncharacterized protein
STRING	XP_002525139.1	4e-63	(Ricinus communis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA6607	22	34

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G31070.1	1e-47	TCP domain protein 10

Publications ? help Back to Top
Koyama T,Sato F,Ohme-Takagi M Roles of miR319 and TCP Transcription Factors in Leaf Development. Plant Physiol., 2017. 175(2): p. 874-885 [PMID:28842549] Bresso EG,Chorostecki U,Rodriguez RE,Palatnik JF,Schommer C Spatial Control of Gene Expression by miR319-Regulated TCP Transcription Factors in Leaf Development. Plant Physiol., 2018. 176(2): p. 1694-1708 [PMID:29133375]