PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SMil_00026876-RA_Salv
Common NameMYB59
Organism
Salvia miltiorrhiza
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Mentheae; Salvia
Family MYB
Protein Properties Length: 231aa    MW: 27344 Da    PI: 9.539
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SMil_00026876-RA_SalvgenomeNDCTCMView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding59.38.4e-191663148
                           TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
        Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                           +g+WT+eEd llv++vk++G g W+++a   g++R +k+c++rw +yl
  SMil_00026876-RA_Salv 16 KGPWTAEEDRLLVEYVKLHGEGKWNAVAMLAGLKRNGKSCRLRWVNYL 63
                           79********************************************97 PP
2Myb_DNA-binding49.11.3e-1569113147
                            TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
        Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                            rgr T+ E+  ++++++++G++ W+tIar ++ gRt++++k++w+++
  SMil_00026876-RA_Salv  69 RGRITPYEESVILELHARWGNR-WSTIARSLP-GRTDNEIKNYWRTH 113
                            8999******************.*********.************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129424.271167IPR017930Myb domain
SuperFamilySSF466895.24E-3014110IPR009057Homeodomain-like
SMARTSM007172.3E-161565IPR001005SANT/Myb domain
PfamPF002494.4E-171663IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.606.1E-231770IPR009057Homeodomain-like
CDDcd001674.87E-111863No hitNo description
SMARTSM007174.1E-1368116IPR001005SANT/Myb domain
PROSITE profilePS5129417.59468118IPR017930Myb domain
PfamPF002496.3E-1369113IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.3E-2371117IPR009057Homeodomain-like
CDDcd001676.00E-873114No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 231 aa     Download sequence    Send to blast
MAQYARCGVM EEEWRKGPWT AEEDRLLVEY VKLHGEGKWN AVAMLAGLKR NGKSCRLRWV  60
NYLRPDLKRG RITPYEESVI LELHARWGNR WSTIARSLPG RTDNEIKNYW RTHFKKKGKS  120
TSRNTEKLRA RLLKRQQFQQ QQLQQQRHQQ DEIDMKKIIS LFYENDTKLS TSDESSHELV  180
VHTSPLVEQE VLPEAPNDLS IWDGLWSMDD LHGNNCLNRA IYQHNLVSHF F
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h8a_C3e-26911720127MYB TRANSFORMING PROTEIN
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. {ECO:0000305}.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKF0594130.0KF059413.1 Salvia miltiorrhiza MYB-related transcription factor (MYB59) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006285781.22e-93transcription repressor MYB6
SwissprotP813916e-52MYB05_ANTMA; Myb-related protein 305
TrEMBLA0A059PRE91e-172A0A059PRE9_SALMI; MYB-related transcription factor
STRINGXP_006285781.19e-93(Capsella rubella)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA12242154
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G13480.16e-78myb domain protein 79
Publications ? help Back to Top
  1. Jackson D,Culianez-Macia F,Prescott AG,Roberts K,Martin C
    Expression patterns of myb genes from Antirrhinum flowers.
    Plant Cell, 1991. 3(2): p. 115-25
    [PMID:1840903]
  2. Li C,Lu S
    Genome-wide characterization and comparative analysis of R2R3-MYB transcription factors shows the complexity of MYB-associated regulatory networks in Salvia miltiorrhiza.
    BMC Genomics, 2014. 15: p. 277
    [PMID:24725266]