PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | SMil_00026843-RA_Salv | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Mentheae; Salvia
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Family | ERF | ||||||||
Protein Properties | Length: 232aa MW: 25372.4 Da PI: 8.2144 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 62.7 | 8.2e-20 | 29 | 79 | 2 | 56 |
AP2 2 gykGVrwdkkrgrWvAeIrd.psengkrkrfslgkfgtaeeAakaaiaarkklege 56 +++GVr ++ +gr++AeIrd ++ ++r++lg+f++ae+Aa+a++aa+++l+g+ SMil_00026843-RA_Salv 29 RFRGVRKRP-WGRFAAEIRDpWK----KTRVWLGTFDSAEDAARAYDAAARSLRGA 79 69*******.**********883....5*************************995 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00018 | 6.20E-18 | 29 | 85 | No hit | No description |
PROSITE profile | PS51032 | 22.748 | 29 | 86 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 2.9E-34 | 29 | 92 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 1.6E-12 | 29 | 78 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 1.6E-30 | 29 | 86 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 1.83E-21 | 30 | 87 | IPR016177 | DNA-binding domain |
PRINTS | PR00367 | 2.9E-10 | 30 | 41 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 2.9E-10 | 52 | 68 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 232 aa Download sequence Send to blast |
MRRGRAAARQ AEAIHGGGVN GSGVSKEVRF RGVRKRPWGR FAAEIRDPWK KTRVWLGTFD 60 SAEDAARAYD AAARSLRGAK AKTNFSVPLN GAVSPNFNPQ NPNQPQIDDN PNDPFMDSRF 120 YPQEHHIIAQ QRPTSSGMSS TVESFSGPRQ LPLPLPLVRQ PRLYPRSPPM VPDDCRSDCD 180 SSSSVVDDTE CDIASSSCKK PLPFDLNMPP PVDAVSGVDA DVDELACTAL RL |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5wx9_A | 2e-19 | 20 | 90 | 4 | 76 | Ethylene-responsive transcription factor ERF096 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor that binds to the GCC-box pathogenesis-related promoter element. Involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways. Probably acts as a transcriptional repressor and may regulate other AtERFs (By similarity). {ECO:0000250}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_011095450.1 | 1e-107 | ethylene-responsive transcription factor 3-like | ||||
Swissprot | Q9SXS8 | 1e-57 | ERF3_TOBAC; Ethylene-responsive transcription factor 3 | ||||
TrEMBL | A0A4D9B7V6 | 1e-120 | A0A4D9B7V6_SALSN; EREBP-like factor | ||||
STRING | Migut.M01719.1.p | 1e-104 | (Erythranthe guttata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA3330 | 23 | 47 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G50640.1 | 2e-29 | ethylene responsive element binding factor 3 |