PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | SMil_00026829-RA_Salv | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Mentheae; Salvia
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Family | bHLH | ||||||||
Protein Properties | Length: 460aa MW: 51183.3 Da PI: 6.827 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 51.1 | 2.5e-16 | 299 | 345 | 3 | 54 |
HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 ++hn ErrRRdriN++++ L+el+P++ K +Ka++L +A+eY+k+L SMil_00026829-RA_Salv 299 EMHNLSERRRRDRINQKMHALQELIPNC-----NKADKASMLDEAIEYVKNL 345 68*************************8.....6****************99 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00083 | 5.11E-17 | 292 | 350 | No hit | No description |
Gene3D | G3DSA:4.10.280.10 | 3.4E-21 | 293 | 354 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 1.57E-20 | 293 | 358 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
PROSITE profile | PS50888 | 18.343 | 296 | 345 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 1.6E-13 | 299 | 345 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 1.3E-17 | 302 | 351 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 460 aa Download sequence Send to blast |
MPLYEFLRLA IEKLESSKQK PCSVDPSSKT ENELFARDGR SPTHLSLQPD TPSVCDDATL 60 GNCTTGRAGK FGGVEYIFND ISPELDSSRK DETAPWISYP KDDTLQDYSS FSAHPLLPSA 120 PSLLNCQDAR FWNSEEGRDL VESRNTELPV EEIVSAPRCS ATVKRVLIDQ LNITEKDVDL 180 HVPAAVNSRE LFVDERTKNI SLDTFMKTDK SLIQSNTIES TRPLDGKTTV EPIVASSFVS 240 SGNSGDRNFN EQKRYTKGKS HHNEDSECQS DELQNESVGL KKLSPAKGGS GSKRRRATEM 300 HNLSERRRRD RINQKMHALQ ELIPNCNKAD KASMLDEAIE YVKNLKHQVQ IMSMGYGSCV 360 APFMYYAAIP HSSYAGVRMG NMSGGSPQCP VFHAHFPTSV VNCPEFPSPI HGPRFFPLTK 420 SQQTLVTNHD QVPCMITNKI LSSKPRNEGP NQSPTARESN |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 293 | 308 | RRRATEMHNLSERRRR |
2 | 304 | 309 | ERRRRD |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | KP257540 | 0.0 | KP257540.1 Salvia miltiorrhiza clone 107 basic helix-loop-helix transcription factor mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_011087568.1 | 1e-69 | transcription factor PIF3 isoform X3 | ||||
Refseq | XP_020552005.1 | 2e-69 | transcription factor PIF3 isoform X2 | ||||
TrEMBL | A0A0H3YC67 | 0.0 | A0A0H3YC67_SALMI; Basic helix-loop-helix transcription factor | ||||
STRING | VIT_14s0060g00260.t01 | 5e-55 | (Vitis vinifera) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA4965 | 24 | 37 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G09530.2 | 7e-37 | phytochrome interacting factor 3 |