PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SMil_00026782-RA_Salv
Organism
Salvia miltiorrhiza
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Mentheae; Salvia
Family TALE
Protein Properties Length: 365aa    MW: 41815.7 Da    PI: 6.7434
Description TALE family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SMil_00026782-RA_SalvgenomeNDCTCMView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox22.91.4e-073053382154
                            HSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS
               Homeobox  21 knrypsaeereeLAkklgLterqVkvWFqNrRak 54 
                            k +yp++e++++L +++gL+ +q+ +WF N+R +
  SMil_00026782-RA_Salv 305 KWPYPTEEDKARLVQETGLQLKQINNWFINQRKR 338
                            469*****************************87 PP
2ELK27.57.3e-10259280122
                    ELK   1 ELKhqLlrKYsgyLgsLkqEFs 22 
                            ELKh+L+++Y++++ ++++E++
  SMil_00026782-RA_Salv 259 ELKHELKQGYKEKIFDIREEIL 280
                            9*******************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM012555.1E-2093137IPR005540KNOX1
PfamPF037902.8E-1795136IPR005540KNOX1
SMARTSM012561.7E-24147202IPR005541KNOX2
PfamPF037913.1E-18151201IPR005541KNOX2
PROSITE profilePS512139.812259279IPR005539ELK domain
SMARTSM011880.0035259280IPR005539ELK domain
PfamPF037891.2E-4259280IPR005539ELK domain
PROSITE profilePS5007111.71279342IPR001356Homeobox domain
SMARTSM003895.2E-11281346IPR001356Homeobox domain
SuperFamilySSF466893.29E-16281347IPR009057Homeodomain-like
CDDcd000867.78E-11282341No hitNo description
Gene3DG3DSA:1.10.10.601.6E-25286343IPR009057Homeodomain-like
PfamPF059209.7E-18299338IPR008422Homeobox KN domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 365 aa     Download sequence    Send to blast
MKGVQCSRSG NRVVLVHRQN MAFQDHHELS QQQIPLQLPR YSDHHHPFPS PEDKPSTWLH  60
HQWLPTQSQP SPPDNSDHRQ DSGDSNDAAW EKERCKADIL SHPLYDQLLS AHVACLRIAT  120
PVDQLPKIDA QLAQSHQMLA KYSVLGHAHQ PLHDKDLDHF MTHYVLLLSS FKEQLQQHVR  180
VHAMEAVMAC WELEQSLQSL TGVAPGEGTG ATMSDDDEEQ ADSEMNLFDE SLDGTDSMGF  240
GPLVPTESER SLMERVKQEL KHELKQGYKE KIFDIREEIL RKRRAGKLPG DTTSMLKAWW  300
QSHSKWPYPT EEDKARLVQE TGLQLKQINN WFINQRKRNW HSNPSSSSSS QKSKRKNAAG  360
DKNNN
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1x2n_A4e-12282347873Homeobox protein PKNOX1
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011084049.10.0homeobox protein knotted-1-like LET12 isoform X1
SwissprotP480001e-162KNAT3_ARATH; Homeobox protein knotted-1-like 3
TrEMBLA0A2G9HS050.0A0A2G9HS05_9LAMI; Transcription factor MEIS1
STRINGMigut.J01270.1.p0.0(Erythranthe guttata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA14322472
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G25220.11e-156KNOTTED1-like homeobox gene 3
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]