PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | SMil_00026781-RA_Salv | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Mentheae; Salvia
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Family | LBD | ||||||||
Protein Properties | Length: 228aa MW: 24898.3 Da PI: 10.6799 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 101.4 | 8.2e-32 | 4 | 107 | 1 | 99 |
DUF260 1 aCaaCkvlrrkCakdCvlapyf.....paeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilkl 83 +C++C+vlr++C+++C ++p++ p++q++++ +++k++G++ +++l++a p++ r+++++sl+yeA+ r+ +P+yG+vg+++++ SMil_00026781-RA_Salv 4 SCNGCRVLRKGCSENCSIRPCLewiksPDSQANATVFLAKFYGRAGLMNLINAGPHHLRPAIFRSLLYEACGRIVNPIYGSVGLMWSG 91 6*************************************************************************************** PP DUF260 84 qqqleqlkaelallke 99 ++ql+q+++e++l ++ SMil_00026781-RA_Salv 92 SWQLCQTAVEAVLKGA 107 **********998766 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50891 | 16.511 | 3 | 109 | IPR004883 | Lateral organ boundaries, LOB |
Pfam | PF03195 | 3.1E-25 | 4 | 103 | IPR004883 | Lateral organ boundaries, LOB |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
Sequence ? help Back to Top |
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Protein Sequence Length: 228 aa Download sequence Send to blast |
MRLSCNGCRV LRKGCSENCS IRPCLEWIKS PDSQANATVF LAKFYGRAGL MNLINAGPHH 60 LRPAIFRSLL YEACGRIVNP IYGSVGLMWS GSWQLCQTAV EAVLKGAPIT QISTDAAEAK 120 NGPPLKAFDI RHVTKDGTLS GSGDLHRVRT RCRFKRSASK GRRSRVWVGS PDESGNGSPS 180 HESALSHQSA TAEPVPERTS RRSEESLGSA ETPEPKPMRI ATRSRRRG |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_011099556.1 | 1e-125 | LOB domain-containing protein 41 | ||||
Swissprot | Q9M886 | 9e-91 | LBD41_ARATH; LOB domain-containing protein 41 | ||||
TrEMBL | A0A4D9C3B9 | 1e-120 | A0A4D9C3B9_SALSN; Uncharacterized protein | ||||
STRING | Migut.L00314.1.p | 1e-107 | (Erythranthe guttata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA886 | 24 | 94 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G02550.1 | 4e-93 | LOB domain-containing protein 41 |