PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | SMil_00026728-RA_Salv | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Mentheae; Salvia
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Family | TCP | ||||||||
Protein Properties | Length: 161aa MW: 18012.2 Da PI: 6.1189 | ||||||||
Description | TCP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | TCP | 89.4 | 8e-28 | 8 | 131 | 6 | 131 |
TCP 6 drhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec.eaesssssasnsssg.... 88 +rh k+ T++g+ dRRvRls+++a++f+dLqd+LG+d++sk+ eWLl++a +i el+ ++s + ++ s+++ +s+ +s+ SMil_00026728-RA_Salv 8 SRHIKVLTSKGLQDRRVRLSVNTAIQFYDLQDRLGYDQPSKAMEWLLKAAASSIAELPPMNTSFLD-TpKQLSDEKRSSTTGSDqlcf 94 59********************************************************99333331.122222222222222222223 PP TCP 89 ...............kaaksaakskksqksaasalnlakesrakarararertrekmr 131 +sr+++r +are t+e+ + SMil_00026728-RA_Salv 95 dsaeidldggvviriT---------------------PSSSRSESRIKAREWTKERVA 131 2222222222222220.....................223333333333333333333 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51369 | 24.764 | 6 | 64 | IPR017887 | Transcription factor TCP subgroup |
Pfam | PF03634 | 1.8E-29 | 9 | 134 | IPR005333 | Transcription factor, TCP |
Sequence ? help Back to Top |
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Protein Sequence Length: 161 aa Download sequence Send to blast |
MTLIHMYSRH IKVLTSKGLQ DRRVRLSVNT AIQFYDLQDR LGYDQPSKAM EWLLKAAASS 60 IAELPPMNTS FLDTPKQLSD EKRSSTTGSD QLCFDSAEID LDGGVVIRIT PSSSRSESRI 120 KAREWTKERV ADKEEENAPT HAGSLNPISH TTSFTELLNG E |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5zkt_A | 3e-23 | 12 | 65 | 2 | 55 | Putative transcription factor PCF6 |
5zkt_B | 3e-23 | 12 | 65 | 2 | 55 | Putative transcription factor PCF6 |
Search in ModeBase |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_011096599.1 | 4e-70 | transcription factor TCP2-like | ||||
Refseq | XP_011096600.1 | 4e-70 | transcription factor TCP2-like | ||||
Refseq | XP_020554008.1 | 4e-70 | transcription factor TCP2-like | ||||
TrEMBL | A0A4D9B5Y7 | 8e-71 | A0A4D9B5Y7_SALSN; Uncharacterized protein | ||||
STRING | Migut.M00891.1.p | 4e-66 | (Erythranthe guttata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA2464 | 22 | 52 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G18390.2 | 7e-36 | TEOSINTE BRANCHED 1, cycloidea and PCF transcription factor 2 |