PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | SMil_00026677-RA_Salv | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Mentheae; Salvia
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Family | ERF | ||||||||
Protein Properties | Length: 174aa MW: 19612.8 Da PI: 4.9187 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 56.7 | 6e-18 | 81 | 131 | 2 | 55 |
AP2 2 gykGVrwdkkrgrWvAeIrdpseng.krkrfslgkfgtaeeAakaaiaarkkleg 55 +y+GVr+++ +g+++Ae r p k r +lg++ t+eeAa a+++a+ kl+g SMil_00026677-RA_Salv 81 RYRGVRRRP-WGKFAAEMRNP---DrKGSRLWLGTYETPEEAAMAYDRAAFKLRG 131 8********.*******9997...3245*************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00018 | 3.48E-31 | 80 | 141 | No hit | No description |
Gene3D | G3DSA:3.30.730.10 | 8.7E-31 | 81 | 140 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 4.1E-36 | 81 | 145 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 3.3E-14 | 81 | 131 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 7.85E-23 | 81 | 140 | IPR016177 | DNA-binding domain |
PROSITE profile | PS51032 | 24.316 | 81 | 139 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 1.7E-10 | 82 | 93 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 1.7E-10 | 105 | 121 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 174 aa Download sequence Send to blast |
MEAQNVSELD LAWLDSIQNF LLSDIDFDFG FDSSPTDSPL NATPINDDSD YSTQMIEELL 60 SDDSDSAVSE EPPQSVAEWK RYRGVRRRPW GKFAAEMRNP DRKGSRLWLG TYETPEEAAM 120 AYDRAAFKLR GSRARVNFPH LIGSGVSEPT RVTKRRRISQ DATVSTSKKM KTGA |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2gcc_A | 3e-28 | 77 | 145 | 1 | 69 | ATERF1 |
3gcc_A | 3e-28 | 77 | 145 | 1 | 69 | ATERF1 |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 153 | 157 | KRRRI |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_011094418.1 | 1e-66 | ethylene-responsive transcription factor 13-like | ||||
TrEMBL | A0A4D8ZUJ8 | 2e-81 | A0A4D8ZUJ8_SALSN; Uncharacterized protein | ||||
STRING | PGSC0003DMT400091474 | 1e-48 | (Solanum tuberosum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA21 | 24 | 1165 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G44840.1 | 1e-39 | ethylene-responsive element binding factor 13 |