PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | SMil_00026669-RA_Salv | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Mentheae; Salvia
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Family | B3 | ||||||||
Protein Properties | Length: 241aa MW: 28117.6 Da PI: 10.4984 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 53.1 | 5.9e-17 | 11 | 101 | 1 | 97 |
EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTE.EEE-TTHHHHHHHHT--TT-EEEEEE-SS CS B3 1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgr.yvltkGWkeFvkangLkegDfvvFkldgr 87 ffkvl s++ +++l+lp +f++++++ + +++l++ d sgr+W+v++ ++ +++ + + +GW +Fv++ Lk g+f+vF+++ + SMil_00026669-RA_Salv 11 FFKVL--SNMDFRKLLRLPPHFLRKYELTLPANVKLRVDD-SGRRWNVRV--ERMDDGlFCFMNGWGKFVEDAALKLGEFLVFSVVAK 93 89***..88888889***********98877777777555.*********..777777799999********************8764 PP SEE..EEEEE CS B3 88 sefelvvkvf 97 se +v ++ SMil_00026669-RA_Salv 94 SEL--NVVIY 101 544..66665 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101936 | 1.43E-20 | 5 | 104 | IPR015300 | DNA-binding pseudobarrel domain |
Gene3D | G3DSA:2.40.330.10 | 1.5E-21 | 5 | 104 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 1.49E-15 | 9 | 101 | No hit | No description |
PROSITE profile | PS50863 | 13.535 | 9 | 104 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 3.4E-14 | 11 | 104 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 1.9E-14 | 11 | 101 | IPR003340 | B3 DNA binding domain |
Gene3D | G3DSA:2.40.330.10 | 3.3E-8 | 138 | 233 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 1.43E-9 | 139 | 235 | IPR015300 | DNA-binding pseudobarrel domain |
PROSITE profile | PS50863 | 8.586 | 143 | 241 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 0.021 | 145 | 241 | IPR003340 | B3 DNA binding domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 241 aa Download sequence Send to blast |
MSWRSKEKPS FFKVLSNMDF RKLLRLPPHF LRKYELTLPA NVKLRVDDSG RRWNVRVERM 60 DDGLFCFMNG WGKFVEDAAL KLGEFLVFSV VAKSELNVVI YETSCWKREI PPVELNAYGL 120 YVRKGANDVA TSERNENSKE SNPLYFKIHL RAFHKSRIML PKPFSKAAKM KARKRVRLEY 180 EGRHGGGGCF AAALRPQKSG RVDLGKGWYD FRVANGLRYD RVYSFEMKSD DDQVIYVKRL 240 N |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA6635 | 9 | 31 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G66980.1 | 2e-10 | B3 family protein |