PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | SMil_00026668-RA_Salv | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Mentheae; Salvia
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Family | B3 | ||||||||
Protein Properties | Length: 252aa MW: 28773.9 Da PI: 9.5281 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 53.2 | 5.4e-17 | 22 | 103 | 13 | 99 |
TT-EE--HHH.HTT---..--SEEEEEETTS.-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE-S CS B3 13 sgrlvlpkkfaeehggkkeesktltledesg.rsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfrk 99 s+ l++p kf+ ++ + + ++le+e + W+vk+ + + +++t+GW+eFv +n++ e+Df++F+++ +s+f +v+v+r+ SMil_00026668-RA_Salv 22 SSKLCIPTKFMMKYRQAVQ--HSVVLETEYSpTLWDVKI--KHLNSDFYMTDGWSEFVTDNQVGERDFLTFRFVAESTF--KVSVYRS 103 3459**********54433..36*****877699*****..555555*************************9998888..8888875 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101936 | 1.61E-20 | 8 | 106 | IPR015300 | DNA-binding pseudobarrel domain |
PROSITE profile | PS50863 | 12.731 | 10 | 104 | IPR003340 | B3 DNA binding domain |
Gene3D | G3DSA:2.40.330.10 | 2.5E-20 | 11 | 106 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 3.51E-13 | 12 | 102 | No hit | No description |
SMART | SM01019 | 1.1E-13 | 13 | 104 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 3.1E-14 | 22 | 103 | IPR003340 | B3 DNA binding domain |
PROSITE profile | PS50863 | 7.542 | 150 | 252 | IPR003340 | B3 DNA binding domain |
SuperFamily | SSF101936 | 6.67E-7 | 151 | 240 | IPR015300 | DNA-binding pseudobarrel domain |
Gene3D | G3DSA:2.40.330.10 | 5.3E-7 | 151 | 240 | IPR015300 | DNA-binding pseudobarrel domain |
SMART | SM01019 | 0.019 | 153 | 249 | IPR003340 | B3 DNA binding domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 252 aa Download sequence Send to blast |
LRMPRSEYQR ASFMKLCLGD FSSKLCIPTK FMMKYRQAVQ HSVVLETEYS PTLWDVKIKH 60 LNSDFYMTDG WSEFVTDNQV GERDFLTFRF VAESTFKVSV YRSNGCATSP ISSDVDESGI 120 KRRSVRPPKK KIEKVAKASR MNCVVKEGNP LCFEACLNPH RRYRINLPKE FTDASNMKVK 180 NQVRVEFVGN GGGRGVFHVT VDARPPPHSR VDLAMGWSQF RVANGLVVGE SYSFEFNPDD 240 QVIYVKEASP FP |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 125 | 134 | RPPKKKIEKV |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA6635 | 9 | 31 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G00260.1 | 5e-12 | B3 family protein |