PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

SMil_00026639-RA_Salv

Organism

Salvia miltiorrhiza

Taxonomic ID

226208

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Mentheae; Salvia

Family

FAR1

Protein Properties

Length: 299aa MW: 32995.7 Da PI: 5.3857

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
SMil_00026639-RA_Salv	genome	NDCTCM	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	75.5	1.1e-23	162	250	2	91
FAR1 2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHel 89 Y++YA+ +GF+vr+ k+++ ++++ ++t++Cskeg ++++ ++ + +++etrtgC+a++ +++g+w+v+++++eHnHe+ SMil_00026639-RA_Salv 162 LYCDYATAMGFNVRRGKQYYFMGTKRVRSKTYCCSKEGVKDDKADT-NGVGYKKPETRTGCRAMISFICDDSGQWKVSRFVKEHNHEM 248 69*************************************99988.888899********************************9 PP FAR1 90 ap 91 ap SMil_00026639-RA_Salv 249 AP 250 75 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	2.4E-20	162	250	IPR004330	FAR1 DNA binding domain

Sequence ? help Back to Top
Protein Sequence Length: 299 aa Download sequence Send to blast
MHPKLLSNSA SAVPAATTSA VALVNHAPPS IAGQFLYSTL VLPEVPLIEF LCTWIKWHDS 60 EFYVVITTSY YELRMSVYSA LLTEAGLLTL RLLYFTEMEN SGFDLELHGA ACGDSDEEGV 120 ALPRSVGEVV DGNEGQDEGH ILELEKKLLE QVVYSEEEAY MLYCDYATAM GFNVRRGKQY 180 YFMGTKRVRS KTYCCSKEGV KDDKADTNGV GYKKPETRTG CRAMISFICD DSGQWKVSRF 240 VKEHNHEMAP PYAKPLVKSG QAILAANVYG SGGALESLVS IASLAHAFIL SNVFFIAMK

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011093602.1	1e-119	uncharacterized protein LOC105173527 isoform X1
TrEMBL	A0A4D8YWH6	1e-126	A0A4D8YWH6_SALSN; Uncharacterized protein
TrEMBL	A0A4D9A755	1e-124	A0A4D9A755_SALSN; Uncharacterized protein
STRING	Migut.J01148.1.p	1e-116	(Erythranthe guttata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA14517	7	9

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G38180.1	2e-14	FAR1-related sequence 5