PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SMil_00026600-RA_Salv
Organism
Salvia miltiorrhiza
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Mentheae; Salvia
Family CAMTA
Protein Properties Length: 1018aa    MW: 113433 Da    PI: 5.1737
Description CAMTA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SMil_00026600-RA_SalvgenomeNDCTCMView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1CG-1131.82.5e-41111203118
                   CG-1   3 ke.kkrwlkneeiaaiLenfekheltlelktrpksgsliLynrkkvryfrkDGyswkkkkdgktvrEdhekLKvggvevlycyYahse 89 
                            +e ++rwl++ ei++iL n+ek++++ e++++p s s         +   +D ++w+kkkdgktv+E+hekLKvg+v++l+cyYah+e
  SMil_00026600-RA_Salv  11 SEaQNRWLRPAEICEILRNYEKFHISPEAPNKPVSMSS-----SSNQ--SNDAHNWRKKKDGKTVKEAHEKLKVGSVDMLNCYYAHGE 91 
                            4449*****************************99764.....3444..79************************************* PP

                   CG-1  90 enptfqrrcywlLeeelekivlvhylevk 118
                            ++++fqrr+ywlLe +l +iv+vhylevk
  SMil_00026600-RA_Salv  92 DDENFQRRSYWLLEPDLMHIVFVHYLEVK 120
                            **************************985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5143762.4166125IPR005559CG-1 DNA-binding domain
SMARTSM010768.1E-589120IPR005559CG-1 DNA-binding domain
PfamPF038592.3E-3612119IPR005559CG-1 DNA-binding domain
Gene3DG3DSA:2.60.40.101.9E-4413501IPR013783Immunoglobulin-like fold
PfamPF018331.5E-4414500IPR002909IPT domain
SuperFamilySSF812963.97E-15414501IPR014756Immunoglobulin E-set
Gene3DG3DSA:1.25.40.204.9E-14594731IPR020683Ankyrin repeat-containing domain
SuperFamilySSF484033.11E-13597730IPR020683Ankyrin repeat-containing domain
CDDcd002047.87E-11597728No hitNo description
PROSITE profilePS5029712.965605660IPR020683Ankyrin repeat-containing domain
SMARTSM000152.9839861IPR000048IQ motif, EF-hand binding site
PROSITE profilePS500967.675840869IPR000048IQ motif, EF-hand binding site
SuperFamilySSF525401.19E-7840890IPR027417P-loop containing nucleoside triphosphate hydrolase
PfamPF006120.011843860IPR000048IQ motif, EF-hand binding site
SMARTSM000159.4E-4862884IPR000048IQ motif, EF-hand binding site
PROSITE profilePS500969.56863887IPR000048IQ motif, EF-hand binding site
PfamPF006127.3E-5865884IPR000048IQ motif, EF-hand binding site
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 1018 aa     Download sequence    Send to blast
MYVIDIKQIL SEAQNRWLRP AEICEILRNY EKFHISPEAP NKPVSMSSSS NQSNDAHNWR  60
KKKDGKTVKE AHEKLKVGSV DMLNCYYAHG EDDENFQRRS YWLLEPDLMH IVFVHYLEVK  120
GNKTNIGYVR NSDRVVPNSE NESSLTSSFR GTSPTSTLSS AYEDVESDSN HQASSTLYSY  180
SESPLIDDTA QSSSYNQLFN SGNQNVSVLN YSSLLGDNKS GGGSPINGAQ ITDGLALWQE  240
VLPDPDAGEI AYEQESQCSL PAQDNWQVLN ALLDQKSLPS GQGIEVGQFC RNPDLKEQSG  300
QRKIQMFISD TDTGNAADAD MEDGMTVTGS ESYFFHLRKP LINGLQTEDS LKKVDSFSRW  360
IAKEIGEAGD LDMQSSNGIS WSIMGSEYDP TMSAQLQVDT HTLNPSVSQD QLFTIIDFSP  420
SWAYSTLDTK VLITGKFLKS GEELSRYRWS IMFGEVEVPA EVLADGILCC CAPLQNPGLV  480
PFYVTCSNRL ACSELREFEY RSGADQIIGS VNVNGDNAIV MHLYQRFEMI LHREPVGSPI  540
HSDGNEFERL SVTDKIISMM EENDQEAELS ENHGPHPKVI GEMLLEKQLK EKFYSWLLSR  600
AADDGKGLTM IDERGQNVLH LAAALGFDWA IQPIIVSGVS IDFRDVNGFT ALHWAAFYGR  660
AVAGCKRKLY PGYKKVLMGL SREDLVAVLV SLGASPGALT DPSAEYPLGR TPADLASSSG  720
HKGISGFLAE TSLTSHLSTL RVNDSGTTEV SVFEPIQTVS ERLAVPRTGA DVPDALSLKD  780
SLAAVCNATQ AAARIHQIFR VQSFQRKKLI GQESDELLNP DTMSLLAPKT SRLGHSDGMA  840
NTAALQIQKK YRGWKKRKEF LLIRQKIVKI QAHVRGHQVR KKYKPIIWSV GILEKVILRW  900
RRKRSGLRGF RSDAVQKEPD AQGSLPLPAP EDDYDFLKEG RKQTEERMQK ALARVQSMAQ  960
HPEGRAQYRR LLTAAEEFRE NKDGSDMLLF PEMMSAEEDL IDVSSLLDDE TFMSLAFE
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator that binds to the DNA consensus sequence 5'-[ACG]CGCG[GTC]-3' (By similarity). Regulates transcriptional activity in response to calcium signals (Probable). Binds calmodulin in a calcium-dependent manner (By similarity). Involved in freezing tolerance in association with CAMTA1 and CAMTA3. Contributes together with CAMTA1 and CAMTA3 to the positive regulation of the cold-induced expression of DREB1A/CBF3, DREB1B/CBF1 and DREB1C/CBF2 (PubMed:23581962). Involved together with CAMTA3 and CAMTA4 in the positive regulation of a general stress response (PubMed:25039701). Involved in tolerance to aluminum. Binds to the promoter of ALMT1 transporter and contributes to the positive regulation of aluminum-induced expression of ALMT1 (PubMed:25627216). {ECO:0000250|UniProtKB:Q8GSA7, ECO:0000269|PubMed:23581962, ECO:0000269|PubMed:25039701, ECO:0000269|PubMed:25627216, ECO:0000305|PubMed:11925432}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By salt, wounding, abscisic acid, H(2)O(2) and salicylic acid (PubMed:12218065). Induced by aluminum (PubMed:25627216). {ECO:0000269|PubMed:12218065, ECO:0000269|PubMed:25627216}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011092424.10.0calmodulin-binding transcription activator 2
SwissprotQ6NPP40.0CMTA2_ARATH; Calmodulin-binding transcription activator 2
TrEMBLA0A4D9BYA40.0A0A4D9BYA4_SALSN; Uncharacterized protein
STRINGMigut.B00609.1.p0.0(Erythranthe guttata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA22302146
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G64220.20.0Calmodulin-binding transcription activator protein with CG-1 and Ankyrin domains
Publications ? help Back to Top
  1. Benn G, et al.
    A key general stress response motif is regulated non-uniformly by CAMTA transcription factors.
    Plant J., 2014. 80(1): p. 82-92
    [PMID:25039701]
  2. Kidokoro S, et al.
    Different Cold-Signaling Pathways Function in the Responses to Rapid and Gradual Decreases in Temperature.
    Plant Cell, 2017. 29(4): p. 760-774
    [PMID:28351986]