PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | SMil_00026538-RA_Salv | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Mentheae; Salvia
|
||||||||
Family | Dof | ||||||||
Protein Properties | Length: 239aa MW: 25114.1 Da PI: 4.6611 | ||||||||
Description | Dof family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-Dof | 125.6 | 1.6e-39 | 23 | 82 | 3 | 62 |
zf-Dof 3 ekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkkss 62 +++lkcprCds+ntkfCyynny+lsqPr+fC++C+ryWtkGGalrn+PvGgg+rkn k+s SMil_00026538-RA_Salv 23 QEQLKCPRCDSANTKFCYYNNYNLSQPRHFCRSCKRYWTKGGALRNIPVGGGSRKNSKRS 82 7899****************************************************9886 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF02701 | 1.7E-33 | 24 | 80 | IPR003851 | Zinc finger, Dof-type |
PROSITE profile | PS50884 | 29.124 | 26 | 80 | IPR003851 | Zinc finger, Dof-type |
ProDom | PD007478 | 3.0E-20 | 26 | 71 | IPR003851 | Zinc finger, Dof-type |
PROSITE pattern | PS01361 | 0 | 28 | 64 | IPR003851 | Zinc finger, Dof-type |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 239 aa Download sequence Send to blast |
MQNPSLYSQI QAQAQQQPQF PDQEQLKCPR CDSANTKFCY YNNYNLSQPR HFCRSCKRYW 60 TKGGALRNIP VGGGSRKNSK RSSSTSSSAD SAASKRPAVA ASPPPSASKD EKNSDRDKAR 120 EVFDTLPLRE ENFSGQFESL SFSSLLGSGG DQYVGLLDGL GPNGPDLEIN GHFDETGSGP 180 NANPALDGEG DEFLNLQGGV GGGGEGEGGG CDGGGWGGGG GGGGDWPDLS IYTPSSNFQ |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Transcription factor that binds specifically to a 5'-AA[AG]G-3' consensus core sequence. {ECO:0000250}. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_012856207.1 | 5e-67 | PREDICTED: dof zinc finger protein DOF3.1 | ||||
Swissprot | O82155 | 1e-42 | DOF17_ARATH; Dof zinc finger protein DOF1.7 | ||||
TrEMBL | A0A2G9GGT2 | 3e-71 | A0A2G9GGT2_9LAMI; Uncharacterized protein | ||||
STRING | Migut.I01007.1.p | 2e-66 | (Erythranthe guttata) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA88 | 24 | 419 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT1G51700.1 | 6e-28 | DOF zinc finger protein 1 |
Publications ? help Back to Top | |||
---|---|---|---|
|