PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SMil_00026533-RA_Salv
Common NameWRKY38
Organism
Salvia miltiorrhiza
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Mentheae; Salvia
Family WRKY
Protein Properties Length: 284aa    MW: 30581.6 Da    PI: 9.6994
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SMil_00026533-RA_SalvgenomeNDCTCMView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY100.31.2e-31212269359
                            -SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
                   WRKY   3 DgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                            D y+WrKYGqK++kgs++pr+YY+C+s  gCp++k+ver+ +dp+++++tYeg+Hnh+
  SMil_00026533-RA_Salv 212 DDYSWRKYGQKPIKGSPHPRGYYKCSSVrGCPARKHVERAVDDPTMLIVTYEGDHNHT 269
                            99************************988****************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF105332.7E-14165208IPR018872Zn-cluster domain
Gene3DG3DSA:2.20.25.802.2E-33201269IPR003657WRKY domain
PROSITE profilePS5081130.871205271IPR003657WRKY domain
SuperFamilySSF1182906.28E-27207269IPR003657WRKY domain
SMARTSM007743.8E-37210270IPR003657WRKY domain
PfamPF031065.9E-27212268IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 284 aa     Download sequence    Send to blast
MAVELMMSYG NSSFASQSEE TAAAEAASGL QSVEKLIRFF SSAQKPAEDY AAVADAAVSK  60
FKRAISLLGQ ARTGHARFRR APTAAASSCS SPNTGEDRGG YSKIYCPTPI QQVPPPDYLH  120
KAAEDSKTIS FSYSHESSFI NSPPSAAAFH VIGTKPPLSS SSSFKRSCAS SGNGISGKCG  180
GRCQCSKRRK LRVKRVVMVP AISMKMADIP PDDYSWRKYG QKPIKGSPHP RGYYKCSSVR  240
GCPARKHVER AVDDPTMLIV TYEGDHNHTL SIAETPATMI LESS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A3e-212072701476Probable WRKY transcription factor 4
2lex_A3e-212072701476Probable WRKY transcription factor 4
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By salicylic acid and strongly during leaf senescence. {ECO:0000269|PubMed:11449049, ECO:0000269|PubMed:11722756}.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKM8231610.0KM823161.1 Salvia miltiorrhiza WRKY protein (WRKY38) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007205552.11e-115probable WRKY transcription factor 7
SwissprotQ9STX01e-78WRKY7_ARATH; Probable WRKY transcription factor 7
TrEMBLA0A0D5Y9A50.0A0A0D5Y9A5_SALMI; WRKY protein
STRINGEMJ067511e-114(Prunus persica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA12202479
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G24240.18e-54WRKY DNA-binding protein 7