PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | SMil_00026473-RA_Salv | ||||||||
Common Name | WRKY47 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Mentheae; Salvia
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Family | WRKY | ||||||||
Protein Properties | Length: 238aa MW: 26719.6 Da PI: 5.1465 | ||||||||
Description | WRKY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRKY | 101.6 | 4.7e-32 | 83 | 139 | 2 | 58 |
--SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS CS WRKY 2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnh 58 dDgy+WrKYGqK++k+s++prsYYrCt ++C++kk+vers ed ++++itYeg H h SMil_00026473-RA_Salv 83 DDGYKWRKYGQKSIKNSPNPRSYYRCTNPRCNAKKQVERSIEDSETLIITYEGLHLH 139 8******************************************************99 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.20.25.80 | 7.1E-30 | 74 | 139 | IPR003657 | WRKY domain |
PROSITE profile | PS50811 | 27.669 | 77 | 142 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 4.45E-27 | 78 | 140 | IPR003657 | WRKY domain |
SMART | SM00774 | 1.0E-36 | 82 | 141 | IPR003657 | WRKY domain |
Pfam | PF03106 | 2.1E-25 | 83 | 139 | IPR003657 | WRKY domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 238 aa Download sequence Send to blast |
MMDELLKLRE GSEDDELVRE LLDELSPLFM QPYNMESASI FSSAAYSAPM ADEIETDSSY 60 SSNGIHGLGH GDYKSEADSV MADDGYKWRK YGQKSIKNSP NPRSYYRCTN PRCNAKKQVE 120 RSIEDSETLI ITYEGLHLHY TYPFLLLNNQ QPDPPFKKHK GPRADPKAHD YAAQTENGLE 180 KMSQQGLLED VVPLTIRKPL VMDATSSHSS SSTSHDRSSQ PSSPASTNSF TYSYLGLM |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2ayd_A | 8e-22 | 81 | 139 | 13 | 71 | WRKY transcription factor 1 |
Search in ModeBase |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | KM823170 | 0.0 | KM823170.1 Salvia miltiorrhiza WRKY protein (WRKY47) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_011094877.1 | 4e-76 | probable WRKY transcription factor 49 | ||||
TrEMBL | A0A0D5YAF9 | 1e-158 | A0A0D5YAF9_SALMI; WRKY protein | ||||
STRING | Migut.J00318.1.p | 6e-73 | (Erythranthe guttata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA12075 | 21 | 24 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G43290.1 | 4e-39 | WRKY DNA-binding protein 49 |