PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | SMil_00026382-RA_Salv | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Mentheae; Salvia
|
||||||||
Family | NF-YC | ||||||||
Protein Properties | Length: 137aa MW: 15546.9 Da PI: 10.3538 | ||||||||
Description | NF-YC family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NF-YC | 43.2 | 8.3e-14 | 15 | 98 | 15 | 97 |
NF-YC 15 dfknhelPlarikkilkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavtrtd.ifdflvdivp 97 ++++ e+P r+k+i+k d+d++++ +ea l++ + ++f+ l+ +s a e+kr+t+ i a++r + dfl+d p SMil_00026382-RA_Salv 15 ELHKLEIPTRRVKNIMKLDKDINKVNSEALFLVASSTQFFLQFLAEKSAHAAVEKKRKTVTVEHIRLATKRHRpTADFLLDSLP 98 6778899*************************************************************99875389*****988 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF47113 | 5.39E-18 | 10 | 104 | IPR009072 | Histone-fold |
Pfam | PF00808 | 2.5E-17 | 20 | 82 | IPR003958 | Transcription factor CBF/NF-Y/archaeal histone domain |
Gene3D | G3DSA:1.10.20.10 | 1.9E-17 | 22 | 98 | IPR009072 | Histone-fold |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0046982 | Molecular Function | protein heterodimerization activity |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 137 aa Download sequence Send to blast |
MAEQEEGENP ASIDELHKLE IPTRRVKNIM KLDKDINKVN SEALFLVASS TQFFLQFLAE 60 KSAHAAVEKK RKTVTVEHIR LATKRHRPTA DFLLDSLPMP PQPTEKNPPG DRAKSRPDKK 120 PVPFATRSID AFFQKTT |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_011086780.2 | 6e-73 | nuclear transcription factor Y subunit gamma isoform X1 | ||||
Refseq | XP_011086781.2 | 6e-73 | nuclear transcription factor Y subunit gamma isoform X2 | ||||
TrEMBL | A0A4D9BRA0 | 6e-77 | A0A4D9BRA0_SALSN; Uncharacterized protein | ||||
STRING | Migut.K00728.1.p | 2e-68 | (Erythranthe guttata) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA11435 | 24 | 25 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT5G43250.1 | 9e-42 | nuclear factor Y, subunit C13 |