PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SMil_00026382-RA_Salv
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Mentheae; Salvia
Family NF-YC
Protein Properties Length: 137aa    MW: 15546.9 Da    PI: 10.3538
Description NF-YC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SMil_00026382-RA_SalvgenomeNDCTCMView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NF-YC43.28.3e-1415981597
                  NF-YC 15 dfknhelPlarikkilkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavtrtd.ifdflvdivp 97
                           ++++ e+P  r+k+i+k d+d++++ +ea  l++ + ++f+  l+ +s   a e+kr+t+    i  a++r   + dfl+d  p
  SMil_00026382-RA_Salv 15 ELHKLEIPTRRVKNIMKLDKDINKVNSEALFLVASSTQFFLQFLAEKSAHAAVEKKRKTVTVEHIRLATKRHRpTADFLLDSLP 98
                           6778899*************************************************************99875389*****988 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF471135.39E-1810104IPR009072Histone-fold
PfamPF008082.5E-172082IPR003958Transcription factor CBF/NF-Y/archaeal histone domain
Gene3DG3DSA:1.10.20.101.9E-172298IPR009072Histone-fold
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 137 aa     Download sequence    Send to blast
MAEQEEGENP ASIDELHKLE IPTRRVKNIM KLDKDINKVN SEALFLVASS TQFFLQFLAE  60
KSAHAAVEKK RKTVTVEHIR LATKRHRPTA DFLLDSLPMP PQPTEKNPPG DRAKSRPDKK  120
PVPFATRSID AFFQKTT
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011086780.26e-73nuclear transcription factor Y subunit gamma isoform X1
RefseqXP_011086781.26e-73nuclear transcription factor Y subunit gamma isoform X2
TrEMBLA0A4D9BRA06e-77A0A4D9BRA0_SALSN; Uncharacterized protein
STRINGMigut.K00728.1.p2e-68(Erythranthe guttata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA114352425
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G43250.19e-42nuclear factor Y, subunit C13