PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | SMil_00026274-RA_Salv | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Mentheae; Salvia
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Family | NF-YB | ||||||||
Protein Properties | Length: 183aa MW: 20599.2 Da PI: 6.5652 | ||||||||
Description | NF-YB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NF-YB | 34.5 | 4.8e-11 | 45 | 138 | 6 | 94 |
NF-YB 6 rflPianvsrimkkvlPanak.....iskdaketvqecvsefisfvtseasdkcqrekrktingddllwalatlGfedyveplkvylk 88 ++lP + v r++k l + + + +d+ e + fi ++++ a+d c++ +r+ in++d++ al ++ f +++ pl+ l+ SMil_00026274-RA_Salv 45 AELPKTIVRRVVKDKLSQLSTgseipVLRDSLIAFSESARIFIHYLSATANDICKESNRQIINAEDVFKALEEIEFPEFIGPLRDSLE 132 567777788888877654332111114567888889999************************************************* PP NF-YB 89 kyrele 94 ++r+ + SMil_00026274-RA_Salv 133 EFRQRN 138 ***876 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.20.10 | 3.0E-28 | 42 | 171 | IPR009072 | Histone-fold |
Pfam | PF00808 | 1.9E-8 | 45 | 115 | IPR003958 | Transcription factor CBF/NF-Y/archaeal histone domain |
SuperFamily | SSF47113 | 1.53E-22 | 46 | 170 | IPR009072 | Histone-fold |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046982 | Molecular Function | protein heterodimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 183 aa Download sequence Send to blast |
LQQLQLAHSP SSTANRIKAL SFERVREMSE EKKDDEATEN VVAEAELPKT IVRRVVKDKL 60 SQLSTGSEIP VLRDSLIAFS ESARIFIHYL SATANDICKE SNRQIINAED VFKALEEIEF 120 PEFIGPLRDS LEEFRQRNAG KKQSKAKQTN TKAKRKEAPP PEPNEGQNKR QAREAVASAP 180 LED |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_012850173.1 | 1e-63 | PREDICTED: DNA polymerase epsilon subunit 3 | ||||
TrEMBL | A0A4D9BYI1 | 1e-77 | A0A4D9BYI1_SALSN; DNA polymerase epsilon subunit 3 | ||||
STRING | Migut.D02442.1.p | 5e-63 | (Erythranthe guttata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA10161 | 24 | 27 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G27470.1 | 2e-36 | nuclear factor Y, subunit B11 |