PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SMil_00026117-RA_Salv
Organism
Salvia miltiorrhiza
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Mentheae; Salvia
Family CO-like
Protein Properties Length: 361aa    MW: 40613.4 Da    PI: 5.9764
Description CO-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SMil_00026117-RA_SalvgenomeNDCTCMView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-B_box248.3e-081860339
               zf-B_box  3 erkCpeHeekelqlfCedCqqllCedClleeHkg......Htv 39
                            r C+ ++e ++ l+C+ ++  lC +C  e H+       H++
  SMil_00026117-RA_Salv 18 DRLCDFCNESKALLYCRADSAKLCFSCDREVHSTnplfkkHNR 60
                           689******99*********************66777777776 PP
2zf-B_box24.74.7e-0861104342
               zf-B_box   3 erkCpeHeekelqlfCedCqqllCedClleeHkg....Htvvpl 42 
                               C+ +++ + ++fC + +  lC++C  e+H++    H+++pl
  SMil_00026117-RA_Salv  61 SLLCNSCSSSPSSIFCCTESAVLCQNCDWEIHNSfgsiHDRRPL 104
                            568*****************************889999999876 PP
3CCT58.32.7e-20317360144
                    CCT   1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkqa 44 
                            R+ al+RYkeK+ktR+++K++rYesRK++AesR R+KGrF+k++
  SMil_00026117-RA_Salv 317 RDSALSRYKEKKKTRRYDKHVRYESRKVRAESRMRIKGRFAKKD 360
                            899**************************************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5011910.7651663IPR000315B-box-type zinc finger
SMARTSM003362.9E-141663IPR000315B-box-type zinc finger
PfamPF006431.7E-61860IPR000315B-box-type zinc finger
CDDcd000211.68E-71950No hitNo description
PROSITE profilePS501199.91159104IPR000315B-box-type zinc finger
PfamPF006433.2E-561103IPR000315B-box-type zinc finger
SMARTSM003360.1964104IPR000315B-box-type zinc finger
PROSITE profilePS5101714.723317359IPR010402CCT domain
PfamPF062038.0E-16317359IPR010402CCT domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005622Cellular Componentintracellular
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 361 aa     Download sequence    Send to blast
MSEAELDMHN SVSRDQSDRL CDFCNESKAL LYCRADSAKL CFSCDREVHS TNPLFKKHNR  60
SLLCNSCSSS PSSIFCCTES AVLCQNCDWE IHNSFGSIHD RRPLEGFTGC PSVTELLGFL  120
GLQDLGKKSL DLGGGNDEEF LDMLVWETPS VVSLDDLIVA NDYDHSAPAF QATGVPPLPK  180
NRNASCGKHK EEIFFQLHKM AKKDPNYSGS LEDFVENNQP QVTAKCVKAS PCLQHKEEPV  240
QLPSYEDSNV DWCFGGGVQD EGFPSTYFGD FSEMSHLVPD KDSDTGFQEI QAFVPADSKA  300
FQPLPTAAAR ELNSQERDSA LSRYKEKKKT RRYDKHVRYE SRKVRAESRM RIKGRFAKKD  360
R
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011079734.10.0zinc finger protein CONSTANS-LIKE 13
TrEMBLA0A4D8ZT280.0A0A4D8ZT28_SALSN; Uncharacterized protein
STRINGMigut.D00173.1.p1e-168(Erythranthe guttata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA73622228
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G47890.11e-76B-box type zinc finger protein with CCT domain